Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HKK55_RS17520 Genome accession   NZ_CP052859
Coordinates   3897540..3899801 (-) Length   753 a.a.
NCBI ID   WP_237151265.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3892540..3904801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK55_RS17485 (HKK55_17485) murB 3892943..3893962 (-) 1020 WP_169355828.1 UDP-N-acetylmuramate dehydrogenase -
  HKK55_RS17490 (HKK55_17490) - 3893959..3894423 (-) 465 WP_169355829.1 low molecular weight protein-tyrosine-phosphatase -
  HKK55_RS17495 (HKK55_17495) kdsB 3894423..3895187 (-) 765 WP_169355830.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKK55_RS17500 (HKK55_17500) - 3895184..3895369 (-) 186 WP_003174668.1 Trm112 family protein -
  HKK55_RS17505 (HKK55_17505) lpxK 3895394..3896404 (-) 1011 WP_169355831.1 tetraacyldisaccharide 4'-kinase -
  HKK55_RS17510 (HKK55_17510) - 3896404..3896832 (-) 429 WP_169355832.1 biopolymer transporter ExbD -
  HKK55_RS17515 (HKK55_17515) exbB 3896829..3897464 (-) 636 WP_169355833.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKK55_RS17520 (HKK55_17520) comA 3897540..3899801 (-) 2262 WP_237151265.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKK55_RS17525 (HKK55_17525) - 3899937..3900452 (+) 516 WP_155583174.1 DUF2062 domain-containing protein -
  HKK55_RS17530 (HKK55_17530) - 3900455..3901825 (-) 1371 WP_169355834.1 sensor histidine kinase -
  HKK55_RS17535 (HKK55_17535) - 3901812..3902540 (-) 729 WP_169355835.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 82258.54 Da        Isoelectric Point: 10.5676

>NTDB_id=441834 HKK55_RS17520 WP_237151265.1 3897540..3899801(-) (comA) [Pseudomonas sp. ADAK18]
MRTGMFALAVGLLVLRFLPALPSTGWLLAMPMLALMLLPFRTYPLAFFLLGLSWACLSAQWALNDRLVPSLDGQTRWLEG
RITGLPQQTDGVVRFELADSRSRKDLLPKRIRVTWHGGPPVHSGERWRLAVTLKRPSGLLNGHGFDYEAWLLAQRIGATG
SVKDGQRLAPARHALRDSIRQRLLTVDAQGREAGLVALVLGDGSGLASQDWRTLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGCWPMRLAWLPWACGLAFAAALGYGLLAGFQVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNGVLILEPL
ASLQPGFWLSFAAVAVLILAFSGRLGPWNPWQTWTRAQWLIAIGLFPVLLILGLPISLSGPLANLFAVPWISLVVLPLAL
LGTLSLPLPFIGEGLLWLAGGALDWLFRGLDLLAQRLPAWTPAEVPIGYWLVSLLGAVLLLLPKGVPFRLLGWPMLLLAV
FPPRESVPHGQVDVVQLDVGQGLAIMLRTRNHTLLYDAGPRFGEFDLGARVVLPALRKFGVTALDVMLLSHADADHAGGA
AAIAQGLPIKRVVGGETDGLPAFLGVQPCISGEQWEWDGVKFELWQWPDATNGNQKSCVLLVQARGERLMLTGDIDRDAE
RALLTTSLAVRTDWLQAPHHGSQSSSSWRFLQRLAPTAVLISRGRGNAFGHPHPQVMARYQALGSAIYDSAEQGALRLQL
GTFQPPVAARSQRRFWREPPPQSGVTKDRVPAT

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=441834 HKK55_RS17520 WP_237151265.1 3897540..3899801(-) (comA) [Pseudomonas sp. ADAK18]
ATGAGAACAGGGATGTTCGCACTCGCCGTGGGGCTGCTTGTCCTGCGATTTTTGCCTGCACTGCCGTCGACGGGCTGGCT
GCTGGCCATGCCGATGTTGGCATTGATGCTGTTACCGTTTCGCACCTATCCATTGGCGTTTTTCCTGCTGGGTTTGAGCT
GGGCTTGCCTTAGCGCGCAGTGGGCCCTGAATGACCGGCTGGTGCCTTCGTTGGACGGGCAGACCCGCTGGCTGGAGGGC
CGGATCACCGGGCTGCCGCAACAGACCGACGGGGTGGTGCGCTTTGAACTGGCCGACAGTCGGTCACGCAAGGATTTGCT
GCCCAAACGTATCCGCGTGACCTGGCATGGCGGCCCACCGGTTCATAGCGGGGAGCGCTGGCGCCTGGCTGTCACACTCA
AGCGTCCTTCCGGGTTGCTCAATGGCCATGGCTTTGACTATGAGGCCTGGCTGTTGGCCCAGCGTATTGGTGCCACCGGT
TCGGTCAAAGACGGCCAGCGTCTGGCTCCTGCCCGGCATGCCTTACGCGATTCGATCCGCCAGCGTCTGTTGACGGTGGA
TGCGCAAGGCCGCGAGGCAGGTCTGGTGGCGCTGGTACTGGGAGATGGTTCGGGCTTGGCGTCGCAGGATTGGCGGACAT
TACAGGACACGGGCACCGTTCACCTGCTGGTGATTTCCGGCCAGCATATCGGGTTGTTGGCGGGGTTGATCTACGGATTG
GTGGCCGGCCTTGCCCGTTATGGCTGTTGGCCTATGCGGTTGGCGTGGTTGCCCTGGGCGTGTGGCCTGGCGTTTGCCGC
CGCGCTGGGGTACGGCTTGCTGGCAGGGTTCCAGGTACCGGTGCAACGGGCCTGTGTCATGGTGGGGCTGGTATTGCTGT
GGCGCCTGCGGTTTCGTCATTTGGGGATCTGGTGGCCATTGTTGCTGGCACTCAATGGCGTGCTGATCCTGGAGCCGCTG
GCCAGCCTGCAGCCGGGGTTCTGGCTATCGTTTGCTGCCGTCGCTGTGCTGATCCTGGCTTTCAGCGGCCGATTGGGTCC
CTGGAATCCCTGGCAAACCTGGACCCGCGCCCAATGGTTGATTGCCATCGGCCTGTTCCCGGTGCTGCTGATACTGGGCT
TGCCCATTAGCCTCAGCGGGCCCTTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCGTTGGCGCTG
CTGGGGACTTTGTCATTACCGTTACCCTTTATAGGAGAGGGTTTGTTGTGGCTGGCGGGTGGTGCGCTCGATTGGTTGTT
CAGGGGCCTGGACCTGTTGGCGCAACGCTTGCCGGCCTGGACGCCCGCCGAGGTGCCCATCGGCTATTGGCTGGTGAGCC
TGTTGGGCGCGGTGTTGCTGTTGCTGCCCAAGGGCGTGCCGTTTCGCCTGTTGGGTTGGCCGATGTTGCTGTTGGCGGTG
TTCCCCCCGCGTGAATCGGTGCCCCATGGTCAGGTTGATGTCGTGCAACTGGACGTCGGGCAGGGGCTGGCGATCATGCT
CCGTACCCGCAACCACACGTTGCTGTACGACGCCGGGCCCCGGTTTGGCGAATTTGACCTCGGCGCGCGGGTCGTCCTGC
CGGCATTACGCAAGTTCGGTGTCACGGCACTGGACGTGATGCTGCTGAGTCATGCCGACGCCGATCATGCCGGTGGCGCG
GCGGCTATTGCCCAAGGTCTGCCGATCAAGCGGGTGGTGGGCGGGGAAACCGATGGGCTGCCGGCCTTCCTGGGCGTTCA
ACCCTGTATCAGCGGGGAACAGTGGGAGTGGGACGGCGTAAAATTCGAGCTGTGGCAATGGCCGGACGCGACCAACGGCA
ATCAAAAGTCCTGTGTGCTGCTGGTGCAGGCCAGAGGCGAGCGGTTGATGCTGACTGGCGATATCGACCGTGATGCCGAA
CGGGCGCTGCTGACCACCTCGCTGGCGGTGCGCACCGATTGGCTGCAAGCCCCTCACCATGGTAGCCAAAGTTCTTCCTC
ATGGCGGTTTCTCCAGCGGCTCGCGCCCACGGCGGTGCTGATTTCACGGGGGCGTGGCAACGCCTTCGGCCATCCTCATC
CGCAGGTCATGGCGCGTTATCAGGCGCTGGGCAGCGCGATTTATGACAGCGCCGAACAGGGCGCTCTACGCTTGCAACTA
GGAACCTTCCAGCCACCGGTCGCCGCTCGCAGTCAACGTCGCTTCTGGCGCGAACCCCCACCGCAATCCGGCGTTACCAA
AGACCGGGTGCCTGCGACATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.779

95.485

0.58
  comA Ralstonia pseudosolanacearum GMI1000

34.777

100

0.363