Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HKK55_RS17515 Genome accession   NZ_CP052859
Coordinates   3896829..3897464 (-) Length   211 a.a.
NCBI ID   WP_169355833.1    Uniprot ID   A0A7Z2XDP2
Organism   Pseudomonas sp. ADAK18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3891829..3902464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK55_RS17480 (HKK55_17480) - 3892211..3892681 (-) 471 WP_169355827.1 (2Fe-2S)-binding protein -
  HKK55_RS17485 (HKK55_17485) murB 3892943..3893962 (-) 1020 WP_169355828.1 UDP-N-acetylmuramate dehydrogenase -
  HKK55_RS17490 (HKK55_17490) - 3893959..3894423 (-) 465 WP_169355829.1 low molecular weight protein-tyrosine-phosphatase -
  HKK55_RS17495 (HKK55_17495) kdsB 3894423..3895187 (-) 765 WP_169355830.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKK55_RS17500 (HKK55_17500) - 3895184..3895369 (-) 186 WP_003174668.1 Trm112 family protein -
  HKK55_RS17505 (HKK55_17505) lpxK 3895394..3896404 (-) 1011 WP_169355831.1 tetraacyldisaccharide 4'-kinase -
  HKK55_RS17510 (HKK55_17510) - 3896404..3896832 (-) 429 WP_169355832.1 biopolymer transporter ExbD -
  HKK55_RS17515 (HKK55_17515) exbB 3896829..3897464 (-) 636 WP_169355833.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKK55_RS17520 (HKK55_17520) comA 3897540..3899801 (-) 2262 WP_237151265.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKK55_RS17525 (HKK55_17525) - 3899937..3900452 (+) 516 WP_155583174.1 DUF2062 domain-containing protein -
  HKK55_RS17530 (HKK55_17530) - 3900455..3901825 (-) 1371 WP_169355834.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22882.05 Da        Isoelectric Point: 7.3618

>NTDB_id=441833 HKK55_RS17515 WP_169355833.1 3896829..3897464(-) (exbB) [Pseudomonas sp. ADAK18]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRVTPEHLLGQVWGWIRDKKLDNAKLKVLRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=441833 HKK55_RS17515 WP_169355833.1 3896829..3897464(-) (exbB) [Pseudomonas sp. ADAK18]
GTGTGGGAATTGGTCAAATCCGGTGGCTGGATGATGTTGCCGATCATTTTGAGTTCCATTGCCGCTCTCGGCATCATCGC
TGAACGCCTGTGGACCCTGCGGGCCAGTCGTGTGACTCCGGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAGAGACA
AGAAACTGGACAACGCCAAACTCAAGGTACTGCGGGCCAATTCGCCCCTGGGGGAAATTCTCGCCGCAGGGCTGGCCAAC
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAGGAGGCCGCCGCTCGGGTCATTCATGAGCTGGAGCGCTATAT
CAATGCACTGGGCACCATCGCGGCCATGGCGCCGCTGCTCGGGCTGCTGGGTACGGTGCTGGGTATGATCGATATCTTCT
CGTCCTTCATGGGCTCGGGCATGACCACCAACGCAGCCGTATTAGCGGGGGGGATTTCCAAGGCCTTGATCACCACGGCG
GCGGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGCTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGTGACCGTGATGTAGACCTGGTTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2XDP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853