Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HKK56_RS25785 Genome accession   NZ_CP052858
Coordinates   5775848..5776255 (+) Length   135 a.a.
NCBI ID   WP_029300456.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK20     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5770848..5781255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK56_RS25755 (HKK56_25755) - 5770863..5771867 (-) 1005 WP_029300469.1 aspartate carbamoyltransferase catalytic subunit -
  HKK56_RS25760 (HKK56_25760) pyrR 5771892..5772398 (-) 507 WP_029300467.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  HKK56_RS25765 (HKK56_25765) ruvX 5772481..5772918 (-) 438 WP_005792259.1 Holliday junction resolvase RuvX -
  HKK56_RS25770 (HKK56_25770) - 5772918..5773487 (-) 570 WP_029300463.1 YqgE/AlgH family protein -
  HKK56_RS25775 (HKK56_25775) - 5773678..5774577 (-) 900 WP_029300459.1 energy transducer TonB -
  HKK56_RS25780 (HKK56_25780) gshB 5774655..5775608 (-) 954 WP_029300457.1 glutathione synthase -
  HKK56_RS25785 (HKK56_25785) pilG 5775848..5776255 (+) 408 WP_029300456.1 twitching motility response regulator PilG Regulator
  HKK56_RS25790 (HKK56_25790) pilH 5776300..5776665 (+) 366 WP_029300454.1 twitching motility response regulator PilH -
  HKK56_RS25795 (HKK56_25795) - 5776678..5777214 (+) 537 WP_029300451.1 chemotaxis protein CheW -
  HKK56_RS25800 (HKK56_25800) - 5777211..5779262 (+) 2052 WP_070993972.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14978.47 Da        Isoelectric Point: 6.9682

>NTDB_id=441825 HKK56_RS25785 WP_029300456.1 5775848..5776255(+) (pilG) [Pseudomonas sp. ADAK20]
MEQHSNALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
DIPVIMLSSRDGLFDKAKGRIVGVDQFLTKPFSKEELLSAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=441825 HKK56_RS25785 WP_029300456.1 5775848..5776255(+) (pilG) [Pseudomonas sp. ADAK20]
ATGGAACAGCATTCCAACGCCTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGCCGCACCGCTGAAACGCTGTT
GAAGAACGTAGGGTGCGAAGTCATCACGGCCATCGACGGTTTTGATGCCCTGGCCAGGATCGTTGACCATCACCCGCACA
TCATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGGTCAAGAACAACCCGGCGTTCAAG
GACATCCCGGTGATCATGCTGTCGTCCAGGGATGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGCGTCGATCAATT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAGTGCGATCAAGGCCTATGTGCCGGGTTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.2

92.593

0.659