Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HKK56_RS15690 Genome accession   NZ_CP052858
Coordinates   3534514..3536769 (-) Length   751 a.a.
NCBI ID   WP_237150383.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3529514..3541769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK56_RS15655 (HKK56_15655) murB 3529917..3530936 (-) 1020 WP_154906766.1 UDP-N-acetylmuramate dehydrogenase -
  HKK56_RS15660 (HKK56_15660) - 3530933..3531397 (-) 465 WP_029299713.1 low molecular weight protein-tyrosine-phosphatase -
  HKK56_RS15665 (HKK56_15665) kdsB 3531397..3532161 (-) 765 WP_070994651.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKK56_RS15670 (HKK56_15670) - 3532158..3532343 (-) 186 WP_003174668.1 Trm112 family protein -
  HKK56_RS15675 (HKK56_15675) lpxK 3532368..3533378 (-) 1011 WP_169390483.1 tetraacyldisaccharide 4'-kinase -
  HKK56_RS15680 (HKK56_15680) - 3533378..3533806 (-) 429 WP_029299722.1 biopolymer transporter ExbD -
  HKK56_RS15685 (HKK56_15685) exbB 3533803..3534438 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKK56_RS15690 (HKK56_15690) comA 3534514..3536769 (-) 2256 WP_237150383.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKK56_RS15695 (HKK56_15695) - 3536906..3537421 (+) 516 WP_029299728.1 DUF2062 domain-containing protein -
  HKK56_RS15700 (HKK56_15700) - 3538220..3540973 (+) 2754 WP_029299730.1 response regulator -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81701.18 Da        Isoelectric Point: 10.9977

>NTDB_id=441810 HKK56_RS15690 WP_237150383.1 3534514..3536769(-) (comA) [Pseudomonas sp. ADAK20]
MRTGMFALALGLLALRLLPALPPVGWLLVLPVVALMLLPFRTYPLAFFLLGLGWACFSAQRALDDRLSPALDGQTRWLEG
RVSGLAQQANGVVRFELSDSRSRQDRLPQRIRVSWQGGPAVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRVGAIG
SVKDGQRLAPARHAWRDGIRQQLLAVDALGREAGLAALVLGDGSGLAAEDWRILQATGTVHLLVISGQHIGLLSGLIYAL
VAGLARYGCWPRRLPWLPWACGLAFAGALAYGVLAGFEVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLIIEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWRAWLAWTRAQWLIAIGLFPLLLILGLPISLSAPLANLFAVPWISLLVLPLAL
AGTLLLALPWLGGGLLWLAGGALDWLFMALAMLAERVPAWMPAEVPVGYWLLSLLGALLLLMPKGIPFRLLGWPLLLLAV
FPPRESIPLGQVAVEQLDVGQGLSIVLRTRNHVLLYDAGPRLGEFDLGERVVLPALRKLGVGQVDLMLLSHADADHAGGA
AAVARGGPVKRVVGGETQGLPAFLQTQACVSGEQWEWDGVAFQLWQWADASNGNAKSCVLQVQANGERLLLTGDIDREAE
RALLATPLAVATDWLQAPHHGSRSSSSWPFVQRVAPKAVLISRGRGNSFGHPHPQVLARYRYLRSAIYDSAEQGAIRLRL
GAFQAPVMARSQRRFWRAPVIDSYQRPVPAT

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=441810 HKK56_RS15690 WP_237150383.1 3534514..3536769(-) (comA) [Pseudomonas sp. ADAK20]
ATGCGTACAGGGATGTTTGCGCTGGCGTTGGGGCTGCTGGCGTTGCGCCTGCTGCCTGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGTTGCCGGTGGTGGCGTTGATGCTGCTGCCGTTTCGAACTTATCCGCTGGCATTTTTCCTGTTGGGCCTGGGGT
GGGCCTGTTTCAGCGCGCAACGAGCCCTCGACGATCGGCTCAGCCCCGCGCTGGACGGCCAGACCCGCTGGCTGGAAGGG
CGCGTCAGCGGGCTGGCGCAGCAGGCCAATGGGGTGGTGCGCTTCGAGTTGAGCGACAGCCGGTCACGTCAGGACCGGCT
GCCCCAGCGTATTCGCGTGAGCTGGCAGGGTGGCCCCGCAGTGCGCAGCGGTGAGCGCTGGCGTTTGGCGGTGACCCTCA
AGCGTCCCGCCGGCCTACTGAATTTCCATGGCTTCGACCAGGAGGCCTGGCTGTTGGCCCAGCGTGTGGGGGCGATCGGG
TCGGTCAAGGATGGCCAGCGCCTGGCGCCGGCCCGGCATGCCTGGCGCGATGGGATCCGCCAGCAGTTGTTGGCAGTCGA
TGCCCTGGGGCGCGAAGCCGGGCTGGCTGCACTGGTGCTGGGCGACGGCTCCGGTCTGGCCGCCGAGGACTGGCGCATTT
TGCAGGCCACTGGCACCGTGCATCTATTGGTCATCTCCGGTCAACATATCGGCCTGTTGTCGGGCTTGATCTACGCCCTG
GTGGCCGGGCTGGCCCGCTACGGCTGCTGGCCCAGGCGCTTGCCCTGGCTGCCTTGGGCCTGCGGCCTGGCATTTGCCGG
GGCGCTGGCCTATGGCGTGCTGGCCGGTTTTGAAGTGCCGGTGCAGCGGGCCTGTGTAATGGTGGGGCTGGTGCTGCTGT
GGCGCTTGCGGTTTCGCCATCTGGGGATCTGGTGGCCACTACTGCTGGCCCTGAATGCGGTGTTGATCATCGAACCGCTG
GCCAGCCTGCAACCGGGGTTTTGGCTGTCGTTTGCCGCCGTGGCCGTGTTGGTGCTGGCCTTCGGCGGCCGCCTGGGGCC
ATGGCGCGCCTGGCTTGCCTGGACCCGTGCCCAATGGCTGATCGCTATTGGTCTGTTCCCGCTGCTGCTGATCCTCGGCT
TGCCTATCAGCTTGAGCGCGCCGCTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGCTGGTGCTGCCGTTGGCGCTG
GCGGGCACGCTGTTGCTGGCGCTGCCGTGGCTGGGCGGCGGCCTGCTGTGGCTGGCGGGTGGCGCACTGGATTGGCTGTT
CATGGCCCTGGCCATGCTGGCCGAGCGCGTACCGGCCTGGATGCCTGCCGAGGTGCCCGTTGGCTACTGGTTGCTGAGCC
TGCTGGGGGCACTGCTGTTATTGATGCCCAAGGGCATTCCCTTTCGCCTGCTGGGTTGGCCCCTGTTGCTGCTGGCGGTG
TTCCCGCCCCGCGAATCGATCCCGTTGGGGCAGGTAGCGGTGGAGCAACTGGATGTCGGCCAGGGCCTGTCGATAGTGCT
GCGCACCCGCAACCACGTGCTGTTGTATGACGCCGGTCCGCGGCTTGGGGAGTTCGACCTCGGTGAGCGCGTGGTACTGC
CGGCGCTGCGCAAGCTGGGGGTTGGCCAAGTGGACTTGATGCTGCTCAGTCACGCCGACGCCGACCATGCCGGGGGCGCT
GCGGCGGTTGCGCGGGGGGGGCCGGTCAAGCGGGTGGTGGGCGGGGAAACCCAGGGCCTGCCAGCGTTCCTCCAGACCCA
GGCCTGTGTCAGCGGTGAGCAATGGGAATGGGACGGTGTGGCGTTCCAACTGTGGCAATGGGCGGATGCCAGCAACGGCA
ATGCGAAGTCCTGCGTGCTGCAAGTCCAGGCCAATGGTGAGCGCCTGCTGCTGACCGGCGATATAGACCGCGAGGCCGAG
CGGGCCTTGCTCGCCACGCCCCTGGCGGTCGCCACCGATTGGCTGCAAGCGCCCCATCATGGCAGTCGCAGTTCCTCGTC
ATGGCCGTTCGTCCAGCGAGTCGCCCCCAAGGCCGTGTTGATCTCCCGCGGGCGTGGCAACTCCTTTGGCCATCCGCACC
CGCAAGTACTGGCGCGTTACCGGTATTTGCGCAGCGCCATTTATGACAGCGCCGAGCAGGGCGCCATCCGCCTGCGCCTG
GGGGCTTTCCAGGCGCCGGTCATGGCACGCAGCCAGCGTCGTTTCTGGCGCGCGCCTGTCATTGACAGTTACCAAAGGCC
GGTGCCTGCGACATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-661)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.167

95.606

0.575
  comA Ralstonia pseudosolanacearum GMI1000

34.788

100

0.361