Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HKK56_RS15685 Genome accession   NZ_CP052858
Coordinates   3533803..3534438 (-) Length   211 a.a.
NCBI ID   WP_029299724.1    Uniprot ID   A0AAJ3B5Y0
Organism   Pseudomonas sp. ADAK20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3528803..3539438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK56_RS15650 (HKK56_15650) - 3529053..3529523 (-) 471 WP_029299710.1 (2Fe-2S)-binding protein -
  HKK56_RS15655 (HKK56_15655) murB 3529917..3530936 (-) 1020 WP_154906766.1 UDP-N-acetylmuramate dehydrogenase -
  HKK56_RS15660 (HKK56_15660) - 3530933..3531397 (-) 465 WP_029299713.1 low molecular weight protein-tyrosine-phosphatase -
  HKK56_RS15665 (HKK56_15665) kdsB 3531397..3532161 (-) 765 WP_070994651.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKK56_RS15670 (HKK56_15670) - 3532158..3532343 (-) 186 WP_003174668.1 Trm112 family protein -
  HKK56_RS15675 (HKK56_15675) lpxK 3532368..3533378 (-) 1011 WP_169390483.1 tetraacyldisaccharide 4'-kinase -
  HKK56_RS15680 (HKK56_15680) - 3533378..3533806 (-) 429 WP_029299722.1 biopolymer transporter ExbD -
  HKK56_RS15685 (HKK56_15685) exbB 3533803..3534438 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKK56_RS15690 (HKK56_15690) comA 3534514..3536769 (-) 2256 WP_237150383.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKK56_RS15695 (HKK56_15695) - 3536906..3537421 (+) 516 WP_029299728.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.06 Da        Isoelectric Point: 6.8772

>NTDB_id=441809 HKK56_RS15685 WP_029299724.1 3533803..3534438(-) (exbB) [Pseudomonas sp. ADAK20]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPDHLLGQVWRWIKDKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=441809 HKK56_RS15685 WP_029299724.1 3533803..3534438(-) (exbB) [Pseudomonas sp. ADAK20]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGCGTGACCCCTGATCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGGACAAGGAAAAACTCAAGGAATTGCGGGCCAATTCCCCCCTGGGCGAGATCCTCGCCGCCGGCCTTGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCCGCCGCCCGGGTCATCCACGAGCTGGAGCGCTATAT
CAATGCCCTGGGCACCATCGCCGCGATGGCACCGTTGCTCGGCTTGCTTGGCACGGTGCTGGGCATGATCGATATCTTCA
GCGCCTTTACCGGTTCGGGCATGACCACCAACGCCTCGGTATTGGCCGGGGGGATTTCCAAGGCCTTGATCACCACGGCT
GCGGGCTTGATGGTGGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAACTGGTGGTGGGTAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGGTCCAGGGCGACCGTGACGTCGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867