Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   HMPREF1038_RS02725 Genome accession   NC_018630
Coordinates   503120..504169 (+) Length   349 a.a.
NCBI ID   WP_000653768.1    Uniprot ID   -
Organism   Streptococcus pneumoniae gamPNI0373     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 498120..509169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS02700 (HMPREF1038_00549) - 499065..499418 (+) 354 WP_000115730.1 hypothetical protein -
  HMPREF1038_RS02705 (HMPREF1038_00550) dnaJ 499623..500759 (+) 1137 WP_001836079.1 molecular chaperone DnaJ -
  HMPREF1038_RS12720 (HMPREF1038_00551) - 501081..501455 (-) 375 WP_001845059.1 hypothetical protein -
  HMPREF1038_RS02710 (HMPREF1038_00552) - 501617..501904 (-) 288 WP_000777760.1 hypothetical protein -
  HMPREF1038_RS02715 (HMPREF1038_00553) - 501914..502324 (-) 411 WP_001278301.1 HIT family protein -
  HMPREF1038_RS02720 (HMPREF1038_00554) pptA 502392..503123 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  HMPREF1038_RS02725 (HMPREF1038_00555) pptB 503120..504169 (+) 1050 WP_000653768.1 ABC transporter permease Regulator
  HMPREF1038_RS02730 (HMPREF1038_00556) - 504337..504666 (-) 330 WP_000132583.1 hypothetical protein -
  HMPREF1038_RS02735 (HMPREF1038_00557) - 504943..505281 (+) 339 WP_000682136.1 LytTR family DNA-binding domain-containing protein -
  HMPREF1038_RS02740 (HMPREF1038_00558) comE/blpR 505286..506023 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  HMPREF1038_RS02745 (HMPREF1038_00559) - 506037..507377 (+) 1341 WP_001099894.1 sensor histidine kinase -
  HMPREF1038_RS02750 (HMPREF1038_00560) blpC 507421..507576 (-) 156 WP_000358812.1 quorum-sensing system pheromone BlpC -
  HMPREF1038_RS02755 (HMPREF1038_00561) - 507633..508994 (-) 1362 WP_001069064.1 bacteriocin secretion accessory protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=44181 HMPREF1038_RS02725 WP_000653768.1 503120..504169(+) (pptB) [Streptococcus pneumoniae gamPNI0373]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVEVVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=44181 HMPREF1038_RS02725 WP_000653768.1 503120..504169(+) (pptB) [Streptococcus pneumoniae gamPNI0373]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGTGTCAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAAGTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-156)

Bacterial ABC transporter protein EcsB (EcsB)

(158-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476
  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467

Multiple sequence alignment