Detailed information    

insolico Bioinformatically predicted

Overview


Name   braS   Type   Regulator
Locus tag   SAMSHR1132_RS12940 Genome accession   NC_016941
Coordinates   2649184..2650071 (-) Length   295 a.a.
NCBI ID   WP_000142802.1    Uniprot ID   -
Organism   Staphylococcus argenteus     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2644184..2655071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMSHR1132_RS12920 (SAMSHR1132_24370) - 2644393..2644890 (-) 498 WP_001065264.1 glutathione peroxidase -
  SAMSHR1132_RS14395 - 2644900..2645151 (-) 252 WP_042355824.1 hypothetical protein -
  SAMSHR1132_RS12930 (SAMSHR1132_24380) - 2646319..2648325 (-) 2007 WP_000702338.1 ABC transporter permease -
  SAMSHR1132_RS12935 (SAMSHR1132_24390) - 2648322..2649077 (-) 756 WP_000923758.1 ABC transporter ATP-binding protein -
  SAMSHR1132_RS12940 (SAMSHR1132_24400) braS 2649184..2650071 (-) 888 WP_000142802.1 sensor histidine kinase Regulator
  SAMSHR1132_RS12945 (SAMSHR1132_24410) braR 2650082..2650747 (-) 666 WP_000697875.1 response regulator transcription factor Regulator
  SAMSHR1132_RS12950 (SAMSHR1132_24420) - 2650783..2650968 (-) 186 WP_000604733.1 hypothetical protein -
  SAMSHR1132_RS14160 - 2651158..2651382 (-) 225 Protein_2492 ATP-binding protein -
  SAMSHR1132_RS12960 (SAMSHR1132_24430) - 2651372..2651752 (+) 381 Protein_2493 transposase -
  SAMSHR1132_RS12965 (SAMSHR1132_24440) - 2651768..2652322 (-) 555 WP_001100497.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  SAMSHR1132_RS12970 (SAMSHR1132_24450) - 2652501..2653415 (+) 915 WP_000814445.1 alpha/beta hydrolase -
  SAMSHR1132_RS12975 (SAMSHR1132_24460) - 2653436..2654074 (+) 639 WP_000196907.1 SDR family oxidoreductase -
  SAMSHR1132_RS12980 (SAMSHR1132_24470) - 2654145..2654855 (+) 711 WP_000193375.1 dihydrofolate reductase family protein -

Sequence


Protein


Download         Length: 295 a.a.        Molecular weight: 34029.58 Da        Isoelectric Point: 6.7553

>NTDB_id=44177 SAMSHR1132_RS12940 WP_000142802.1 2649184..2650071(-) (braS) [Staphylococcus argenteus]
MTFIKKIAQEIGIVVVIVALFGLMFYLYRLPLEAFLLTLAIVSLLLLIYIGIMYLIFVKTISQQQQIENLETALYQLKND
QLEYKNDIESYFLTWVHQMKTPITAAQLLLERDEPNVVNRVRQEIIQIDNYTSLALSYLKLLNETSDISVAQISINDLIR
PIIMKYSIQFIDQKTKIHYEPCHCMVLTDVRWTSLMIEQLINNALKYARGKDIWIEYDEKSKQLHIKDNGIGISEADLPK
IFDKGYSGYNGQRQSNSTGIGLFIVKQVSNHTNHPVSVISKQNQGTTFTIQFPNE

Nucleotide


Download         Length: 888 bp        

>NTDB_id=44177 SAMSHR1132_RS12940 WP_000142802.1 2649184..2650071(-) (braS) [Staphylococcus argenteus]
ATGACGTTTATTAAAAAAATTGCTCAGGAAATAGGTATAGTTGTTGTTATTGTAGCTTTGTTTGGCTTGATGTTTTATCT
ATATCGATTGCCACTAGAAGCTTTTTTATTGACGCTTGCAATCGTTTCATTGTTATTACTTATTTACATAGGAATTATGT
ACTTAATCTTTGTTAAGACTATAAGTCAACAGCAACAAATTGAAAACTTAGAAACAGCATTGTATCAACTTAAAAATGAT
CAGCTTGAATATAAAAATGATATAGAAAGTTATTTTTTGACATGGGTACACCAAATGAAAACGCCAATTACTGCGGCACA
ACTATTACTTGAAAGAGATGAACCAAATGTTGTGAATCGTGTTCGCCAAGAAATTATTCAAATTGATAACTATACAAGTT
TAGCATTAAGTTATTTAAAATTATTAAATGAAACATCTGATATATCAGTCGCTCAAATATCAATTAACGATTTAATTAGA
CCAATTATTATGAAATATTCGATACAGTTTATTGATCAAAAAACAAAAATACATTATGAACCTTGTCATTGTATGGTATT
AACCGATGTACGATGGACTTCTTTAATGATAGAACAGCTAATTAATAATGCATTAAAATATGCTAGAGGTAAAGATATAT
GGATTGAATATGATGAGAAATCAAAACAATTACATATTAAAGACAATGGTATTGGCATTAGTGAAGCGGACTTGCCAAAA
ATATTTGATAAAGGCTATTCAGGATATAATGGACAACGCCAAAGTAATTCAACGGGCATCGGTTTATTTATTGTGAAGCA
AGTTTCCAATCATACGAATCATCCTGTTTCAGTCATATCTAAACAGAATCAAGGTACAACATTTACGATTCAATTTCCAA
ATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

87.797

100

0.878


Multiple sequence alignment