Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HKK58_RS07525 Genome accession   NZ_CP052856
Coordinates   1695945..1698134 (-) Length   729 a.a.
NCBI ID   WP_169367048.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1690945..1703134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK58_RS07490 (HKK58_07490) murB 1691314..1692333 (-) 1020 WP_169367043.1 UDP-N-acetylmuramate dehydrogenase -
  HKK58_RS07495 (HKK58_07495) - 1692330..1692794 (-) 465 WP_169367044.1 low molecular weight protein-tyrosine-phosphatase -
  HKK58_RS07500 (HKK58_07500) kdsB 1692794..1693558 (-) 765 WP_169367045.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKK58_RS07505 (HKK58_07505) - 1693555..1693740 (-) 186 WP_003174668.1 Trm112 family protein -
  HKK58_RS07510 (HKK58_07510) lpxK 1693765..1694775 (-) 1011 WP_169367046.1 tetraacyldisaccharide 4'-kinase -
  HKK58_RS07515 (HKK58_07515) - 1694775..1695203 (-) 429 WP_169367047.1 biopolymer transporter ExbD -
  HKK58_RS07520 (HKK58_07520) exbB 1695200..1695835 (-) 636 WP_106579832.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKK58_RS07525 (HKK58_07525) comA 1695945..1698134 (-) 2190 WP_169367048.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKK58_RS07530 (HKK58_07530) - 1698270..1698785 (+) 516 Protein_1504 DUF2062 domain-containing protein -
  HKK58_RS07535 (HKK58_07535) - 1698792..1700150 (-) 1359 WP_119736233.1 sensor histidine kinase -
  HKK58_RS07540 (HKK58_07540) - 1700137..1700862 (-) 726 WP_169367049.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 78935.53 Da        Isoelectric Point: 10.6649

>NTDB_id=441757 HKK58_RS07525 WP_169367048.1 1695945..1698134(-) (comA) [Pseudomonas sp. ADAK22]
MKIGMFALGLGLLSLRLLPALPPTGWLLAIWVIALMLLPFRTYPVAFFLFGLGWACLSAQWALDDRLKPALDGQTRWVEG
RVTGLAQQTSTGVRFELTDSRSRTARLPKRIRVSWHGGPPVNSGERWRLAITLKRPTGLLNFHGFDHEAWLLAQRIGATG
SVKDGQRLAPARNAWRDAVRQRLAAVVLGDGSGLAASDWQVLQDTGTVHLLVISGQHIGLLAGLIYGLVAGLARHGCWPR
ALPWLPWACGLAFAAALGYGLLAGSGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALDAVLVLEPLASLQPGFWLSFA
AVAVLVLAFSGRLGPWSLWHAWTRPQWLIAIGLFPLLLVLGLPVSLSAPVANLFAVPWISLVVLPLALLGTALLAIPFVG
ESLLWLAGGALDGLFRALTLLASQQPAWIPAEVPLVYWWVSLAGAVLLLLPQGLPFRLLGWPMLLLAVFPPRQPVPVGQV
EVVQLDVGQGQALVLRTRHHTLLYDAGPRSGEFDVGARVVLPALKKLGVETLDLLVISHAHADHAGGAAAVAQGLAVQRV
IGGETQGLPALLDAQPCVSGEQWEWDGVAFELWQWPGATTSNPKSCVLGVRANGERLLLTGDIDRAAERAFLASPLAVRT
DWLQAPHHGSRSSSSWPLLEQLAPKSVLISRGRGNAFGHPHPQVLARYQALGSRVYDSAEQGAVRVQLGVFQPPDVARSQ
RRFWRDALP

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=441757 HKK58_RS07525 WP_169367048.1 1695945..1698134(-) (comA) [Pseudomonas sp. ADAK22]
ATGAAAATCGGCATGTTTGCGCTCGGACTTGGCCTGCTTTCGTTGCGACTTTTGCCCGCACTGCCGCCTACCGGATGGTT
ACTGGCCATTTGGGTGATTGCATTGATGTTGTTGCCTTTTCGCACCTACCCGGTGGCCTTTTTCCTCTTCGGATTGGGCT
GGGCGTGCCTGAGCGCGCAGTGGGCGTTGGACGACCGTCTGAAGCCGGCGCTGGATGGCCAGACGCGCTGGGTAGAAGGC
CGCGTGACCGGGTTGGCGCAGCAGACGAGCACCGGCGTACGGTTTGAACTGACCGACAGTCGGTCACGCACAGCCCGCTT
ACCCAAGCGCATTCGGGTGTCCTGGCACGGTGGCCCGCCAGTCAACAGCGGTGAGCGTTGGCGCCTGGCGATCACGTTGA
AGCGGCCAACGGGGCTGCTCAACTTTCACGGTTTTGACCACGAAGCCTGGCTCCTGGCCCAACGTATCGGAGCCACGGGA
TCGGTCAAGGACGGCCAGCGCCTGGCGCCAGCCCGCAATGCCTGGCGCGATGCTGTCCGGCAACGCTTGGCGGCGGTGGT
ATTGGGGGATGGCTCTGGGCTGGCTGCCAGCGACTGGCAGGTATTGCAGGACACCGGAACCGTGCACCTGCTGGTGATTT
CCGGCCAGCACATCGGCTTGCTGGCGGGGTTGATCTACGGTCTGGTGGCCGGGCTCGCCCGCCACGGCTGTTGGCCTCGA
GCCTTGCCGTGGCTGCCATGGGCGTGTGGCCTGGCCTTTGCCGCCGCGCTGGGATACGGCCTGTTGGCTGGGTCTGGTGT
GCCGGTACAACGGGCCTGTGTGATGGTTGGCCTGGTATTGCTGTGGCGTTTGCGCTTCCGGCATTTGGGGATCTGGTGGC
CACTGTTGTTGGCGCTCGACGCCGTGCTGGTGCTGGAACCGTTGGCGAGTTTGCAGCCGGGGTTCTGGTTGTCGTTCGCG
GCCGTCGCGGTGCTGGTACTGGCCTTCAGCGGGCGCTTGGGTCCATGGAGTCTTTGGCACGCATGGACGCGTCCACAGTG
GTTGATTGCCATCGGTTTATTTCCGTTACTGCTGGTGCTGGGCCTGCCTGTAAGCCTGAGCGCGCCAGTGGCGAATCTGT
TTGCCGTGCCATGGATCAGCCTGGTGGTATTGCCATTGGCGCTGCTGGGGACTGCGCTGCTGGCGATTCCGTTTGTGGGT
GAAAGCTTGCTGTGGCTGGCCGGCGGCGCACTCGATGGGCTTTTCAGGGCCCTGACGCTGCTGGCGAGCCAGCAGCCCGC
CTGGATACCGGCCGAGGTGCCCCTGGTGTATTGGTGGGTAAGCCTGGCGGGCGCGGTGTTGTTGCTGCTGCCTCAAGGCC
TGCCGTTTCGGCTGCTGGGCTGGCCAATGCTGCTGCTGGCGGTCTTTCCACCCAGGCAGCCCGTGCCTGTTGGGCAGGTT
GAAGTGGTGCAGTTGGATGTCGGCCAGGGACAGGCGCTGGTCCTGCGCACGCGTCATCACACCTTGCTTTACGATGCGGG
GCCGCGTTCCGGCGAGTTTGATGTTGGCGCGCGTGTGGTGCTGCCCGCGTTGAAAAAGCTCGGGGTCGAGACCTTGGACC
TGTTGGTGATCAGCCATGCTCACGCGGACCACGCGGGCGGTGCGGCAGCAGTTGCCCAAGGGCTTGCAGTCCAGCGGGTA
ATCGGAGGAGAAACCCAAGGCTTGCCGGCATTGCTCGATGCTCAACCCTGTGTCAGTGGCGAGCAATGGGAGTGGGACGG
TGTGGCGTTTGAATTGTGGCAGTGGCCTGGCGCCACTACCAGCAATCCGAAATCCTGTGTATTGGGCGTAAGGGCCAACG
GCGAACGCCTGCTGTTGACCGGCGATATTGACCGCGCTGCCGAACGGGCTTTCCTCGCGTCCCCCCTGGCGGTACGGACC
GATTGGCTGCAGGCGCCGCATCATGGCAGTCGCAGTTCTTCATCCTGGCCCTTGCTGGAACAACTTGCGCCCAAATCGGT
CCTGATCTCACGGGGGCGTGGCAACGCGTTCGGTCATCCGCACCCGCAAGTGCTGGCGCGTTATCAGGCGTTGGGCAGTC
GCGTGTACGATAGCGCCGAGCAAGGCGCCGTGCGGGTGCAATTGGGCGTCTTTCAACCACCTGATGTTGCTCGCAGTCAA
CGCCGCTTCTGGCGTGACGCGTTACCCTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(486-649)

Competence protein (Competence)

(187-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.693

98.628

0.579
  comA Ralstonia pseudosolanacearum GMI1000

35.779

100

0.381