Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HKK58_RS07520 Genome accession   NZ_CP052856
Coordinates   1695200..1695835 (-) Length   211 a.a.
NCBI ID   WP_106579832.1    Uniprot ID   A0A7M1KNP4
Organism   Pseudomonas sp. ADAK22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1690200..1700835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK58_RS07485 (HKK58_07485) - 1690580..1691251 (+) 672 WP_060755618.1 Bax inhibitor-1/YccA family protein -
  HKK58_RS07490 (HKK58_07490) murB 1691314..1692333 (-) 1020 WP_169367043.1 UDP-N-acetylmuramate dehydrogenase -
  HKK58_RS07495 (HKK58_07495) - 1692330..1692794 (-) 465 WP_169367044.1 low molecular weight protein-tyrosine-phosphatase -
  HKK58_RS07500 (HKK58_07500) kdsB 1692794..1693558 (-) 765 WP_169367045.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKK58_RS07505 (HKK58_07505) - 1693555..1693740 (-) 186 WP_003174668.1 Trm112 family protein -
  HKK58_RS07510 (HKK58_07510) lpxK 1693765..1694775 (-) 1011 WP_169367046.1 tetraacyldisaccharide 4'-kinase -
  HKK58_RS07515 (HKK58_07515) - 1694775..1695203 (-) 429 WP_169367047.1 biopolymer transporter ExbD -
  HKK58_RS07520 (HKK58_07520) exbB 1695200..1695835 (-) 636 WP_106579832.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKK58_RS07525 (HKK58_07525) comA 1695945..1698134 (-) 2190 WP_169367048.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKK58_RS07530 (HKK58_07530) - 1698270..1698785 (+) 516 Protein_1504 DUF2062 domain-containing protein -
  HKK58_RS07535 (HKK58_07535) - 1698792..1700150 (-) 1359 WP_119736233.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23021.17 Da        Isoelectric Point: 6.8768

>NTDB_id=441756 HKK58_RS07520 WP_106579832.1 1695200..1695835(-) (exbB) [Pseudomonas sp. ADAK22]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRITPEHLLGQVWGWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=441756 HKK58_RS07520 WP_106579832.1 1695200..1695835(-) (exbB) [Pseudomonas sp. ADAK22]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGCATCACGCCCGAGCATTTGCTGGGGCAGGTGTGGGGCTGGATCAAAAACA
AGCAACTGGATAAAGACAAACTCAAGGAATTGCGCGCCAACTCCCCTCTGGGTGAAATCCTGGCTGCCGGCCTTGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATTGAGGAAGCCGCCGCCCGGGTCATCCACGAGATGGAGCGCTATAT
CAATGCGCTCGGCACCATCGCGGCCATGGCGCCATTGCTCGGCCTGCTGGGTACGGTGCTGGGCATGATTGATATTTTCA
GCTCGTTCATGGGCTCAGGCATGACCACCAATGCTGCGGTATTGGCAGGCGGTATCTCCAAGGCCTTGATTACAACGGCT
GCGGGTCTGATGGTCGGTATTCCTTCGGTGTTTTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTCGTCGTCGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGATCGTGATGTCGATTTCGTCGAGGGCCGGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1KNP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.81

99.526

0.834