Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SAMSHR1132_RS10225 Genome accession   NC_016941
Coordinates   2097167..2097562 (-) Length   131 a.a.
NCBI ID   WP_000932697.1    Uniprot ID   A0A7U7PX14
Organism   Staphylococcus argenteus     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2092167..2102562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMSHR1132_RS10200 (SAMSHR1132_19150) thiE 2092772..2093413 (-) 642 WP_000482953.1 thiamine phosphate synthase -
  SAMSHR1132_RS10205 (SAMSHR1132_19160) thiM 2093415..2094206 (-) 792 WP_000876112.1 hydroxyethylthiazole kinase -
  SAMSHR1132_RS10210 (SAMSHR1132_19170) thiD 2094190..2095020 (-) 831 WP_001039676.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SAMSHR1132_RS10215 (SAMSHR1132_19180) tenA 2095017..2095703 (-) 687 WP_000397288.1 thiaminase II -
  SAMSHR1132_RS10220 (SAMSHR1132_19190) - 2096083..2096775 (-) 693 WP_000752010.1 transglycosylase family protein -
  SAMSHR1132_RS10225 (SAMSHR1132_19200) ssb 2097167..2097562 (-) 396 WP_000932697.1 single-stranded DNA-binding protein Machinery gene
  SAMSHR1132_RS10230 (SAMSHR1132_19210) - 2097756..2098196 (+) 441 WP_000846749.1 YwpF-like family protein -
  SAMSHR1132_RS10235 (SAMSHR1132_19220) fabZ 2098253..2098693 (-) 441 WP_000447680.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SAMSHR1132_RS10240 (SAMSHR1132_19230) murA 2098714..2099979 (-) 1266 WP_000358013.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SAMSHR1132_RS10245 (SAMSHR1132_19240) - 2100091..2100324 (-) 234 WP_000384521.1 DUF1146 family protein -
  SAMSHR1132_RS10250 (SAMSHR1132_19250) - 2100655..2101059 (-) 405 WP_001094393.1 F0F1 ATP synthase subunit epsilon -
  SAMSHR1132_RS10255 (SAMSHR1132_19260) atpD 2101079..2102491 (-) 1413 WP_000511140.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15016.10 Da        Isoelectric Point: 5.2398

>NTDB_id=44174 SAMSHR1132_RS10225 WP_000932697.1 2097167..2097562(-) (ssb) [Staphylococcus argenteus]
MLNKIVIVGRLTKDVQIFEKEERKVATFCVATQRNYKDENGEIVCDYIFCKAFGKLASNIDKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSHNIDNPDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=44174 SAMSHR1132_RS10225 WP_000932697.1 2097167..2097562(-) (ssb) [Staphylococcus argenteus]
ATGCTAAACAAAATCGTAATAGTTGGAAGACTAACGAAAGATGTACAAATCTTTGAAAAGGAGGAAAGAAAGGTTGCTAC
GTTTTGTGTTGCAACACAACGAAATTATAAAGATGAAAACGGAGAAATCGTTTGTGATTATATTTTTTGCAAAGCATTTG
GCAAGCTAGCGTCAAACATTGATAAGTACACCAATCAAGGTACGCTAGTTGGTATTACAGGTCAAATGAGATCAAGAAAA
TATGATAAAGACGGTCAAACACACTTTGTTACAGAATTATATGTTGAAACTATAAAATTCATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCATAATATAGATAATCCTGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7PX14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

93.893

100

0.939
  ssb Staphylococcus aureus MW2

93.13

100

0.931

Multiple sequence alignment