Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HMPREF1038_RS01180 Genome accession   NC_018630
Coordinates   202019..202612 (+) Length   197 a.a.
NCBI ID   WP_000271493.1    Uniprot ID   C1CAI9
Organism   Streptococcus pneumoniae gamPNI0373     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 197019..207612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS01160 (HMPREF1038_00238) ribE 198201..198668 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  HMPREF1038_RS01165 (HMPREF1038_00239) - 198669..199874 (-) 1206 WP_000456639.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  HMPREF1038_RS01170 (HMPREF1038_00240) ribE 199894..200529 (-) 636 WP_000493842.1 riboflavin synthase -
  HMPREF1038_RS01175 (HMPREF1038_00241) ribD 200514..201614 (-) 1101 WP_001284090.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  HMPREF1038_RS01180 (HMPREF1038_00242) ruvA 202019..202612 (+) 594 WP_000271493.1 Holliday junction branch migration protein RuvA Machinery gene
  HMPREF1038_RS01185 (HMPREF1038_00243) - 202622..203185 (+) 564 WP_000166586.1 DNA-3-methyladenine glycosylase I -
  HMPREF1038_RS01190 (HMPREF1038_00244) - 203182..203859 (+) 678 WP_000987416.1 CPBP family intramembrane glutamic endopeptidase -
  HMPREF1038_RS01195 (HMPREF1038_00245) - 203996..205027 (-) 1032 WP_001844444.1 S66 peptidase family protein -
  HMPREF1038_RS01200 (HMPREF1038_00246) - 205282..205965 (-) 684 WP_000078029.1 DUF1129 domain-containing protein -
  HMPREF1038_RS01205 (HMPREF1038_00247) - 205977..206921 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21650.11 Da        Isoelectric Point: 6.2561

>NTDB_id=44169 HMPREF1038_RS01180 WP_000271493.1 202019..202612(+) (ruvA) [Streptococcus pneumoniae gamPNI0373]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEDQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=44169 HMPREF1038_RS01180 WP_000271493.1 202019..202612(+) (ruvA) [Streptococcus pneumoniae gamPNI0373]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGATCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGGTCGCAGTACAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CAI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Streptococcus pneumoniae R6

98.985

100

0.99
  ruvA Streptococcus pneumoniae D39

98.985

100

0.99
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.835

100

0.406

Multiple sequence alignment