Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SAMSHR1132_RS07480 Genome accession   NC_016941
Coordinates   1587449..1588165 (-) Length   238 a.a.
NCBI ID   WP_096001314.1    Uniprot ID   -
Organism   Staphylococcus argenteus     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582449..1593165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMSHR1132_RS07460 (SAMSHR1132_14250) rpsT 1583358..1583609 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SAMSHR1132_RS07465 (SAMSHR1132_14260) holA 1583659..1584633 (-) 975 WP_001282558.1 DNA polymerase III subunit delta -
  SAMSHR1132_RS07470 (SAMSHR1132_14270) comEC 1584690..1586891 (-) 2202 WP_042355915.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SAMSHR1132_RS07475 (SAMSHR1132_14280) - 1586896..1587357 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SAMSHR1132_RS07480 (SAMSHR1132_14290) comEA 1587449..1588165 (-) 717 WP_096001314.1 ComEA family DNA-binding protein Machinery gene
  SAMSHR1132_RS07485 (SAMSHR1132_14300) - 1588205..1588921 (-) 717 WP_000084842.1 class I SAM-dependent methyltransferase -
  SAMSHR1132_RS07490 (SAMSHR1132_14310) rsfS 1588924..1589277 (-) 354 WP_001088023.1 ribosome silencing factor -
  SAMSHR1132_RS07495 (SAMSHR1132_14320) yqeK 1589278..1589862 (-) 585 WP_001019321.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SAMSHR1132_RS07500 (SAMSHR1132_14330) - 1589852..1590421 (-) 570 WP_000725169.1 nicotinate-nucleotide adenylyltransferase -
  SAMSHR1132_RS07505 (SAMSHR1132_14340) yhbY 1590424..1590714 (-) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  SAMSHR1132_RS07510 (SAMSHR1132_14350) aroE 1590719..1591525 (-) 807 WP_000666768.1 shikimate dehydrogenase -
  SAMSHR1132_RS07515 (SAMSHR1132_14360) yqeH 1591538..1592638 (-) 1101 WP_001280131.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26895.54 Da        Isoelectric Point: 9.5551

>NTDB_id=44163 SAMSHR1132_RS07480 WP_096001314.1 1587449..1588165(-) (comEA) [Staphylococcus argenteus]
MVLLYQFLLRYKDFFNQWKLYIISAVVLIMLLIGFIFWRQDEHTARDFENKDTALKQNTSENSSLSKLEDVQVKDGDNSK
NKGPVYIDVKGAVKHPNVYKMTSKDRVIDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHEKN
GNTKNGNTNNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 717 bp        

>NTDB_id=44163 SAMSHR1132_RS07480 WP_096001314.1 1587449..1588165(-) (comEA) [Staphylococcus argenteus]
GTGGTTTTGTTGTATCAATTTTTATTACGCTATAAAGATTTTTTCAATCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGTTATTAATAGGTTTTATATTCTGGAGACAAGATGAACATACTGCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAACACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCAAAA
AATAAAGGTCCTGTATATATCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTACAAAATGACATCTAAGGATAGAGT
AATTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTTATACCGCATAAAGGACAAAAGAACGTTGAACCACAAATTGGAGTAAATAGTGTGCACGAAAAAAAT
GGGAACACAAAAAATGGGAACACAAATAATGGAAACACAAATAATACTAAAGTAAATCTAAATACGGCATCTGTATCTGA
ATTGATGTCTGTTCCTGGAGTAGGTCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAG
AAATTGACGATTTGAAAAAAGTAAAAGGTTTTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(174-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

89.873

99.58

0.895
  comEA Staphylococcus aureus N315

89.873

99.58

0.895

Multiple sequence alignment