Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HMPREF1038_RS00490 Genome accession   NC_018630
Coordinates   72851..73621 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae gamPNI0373     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67851..78621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS00470 (HMPREF1038_00096) - 69726..70163 (+) 438 WP_000076480.1 CoA-binding protein -
  HMPREF1038_RS12975 (HMPREF1038_00097) - 70204..70497 (+) 294 WP_025172549.1 hypothetical protein -
  HMPREF1038_RS00480 (HMPREF1038_00099) - 70526..71536 (-) 1011 WP_000009173.1 YeiH family protein -
  HMPREF1038_RS00485 (HMPREF1038_00100) - 71685..72854 (+) 1170 WP_000366351.1 pyridoxal phosphate-dependent aminotransferase -
  HMPREF1038_RS00490 (HMPREF1038_00101) recO 72851..73621 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  HMPREF1038_RS00495 (HMPREF1038_00102) plsX 73618..74610 (+) 993 WP_000717461.1 phosphate acyltransferase PlsX -
  HMPREF1038_RS00500 (HMPREF1038_00103) - 74616..74849 (+) 234 WP_000136447.1 acyl carrier protein -
  HMPREF1038_RS00505 (HMPREF1038_00104) - 74886..75185 (+) 300 Protein_92 transposase family protein -
  HMPREF1038_RS00510 (HMPREF1038_00105) blpU 75388..75618 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  HMPREF1038_RS13355 (HMPREF1038_00106) - 75621..75746 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  HMPREF1038_RS00525 (HMPREF1038_00107) comA 76333..78486 (+) 2154 WP_000668301.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=44163 HMPREF1038_RS00490 WP_000616164.1 72851..73621(+) (recO) [Streptococcus pneumoniae gamPNI0373]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=44163 HMPREF1038_RS00490 WP_000616164.1 72851..73621(+) (recO) [Streptococcus pneumoniae gamPNI0373]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment