Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   IRJ22_RS05390 Genome accession   NZ_CP064092
Coordinates   1030352..1030723 (+) Length   123 a.a.
NCBI ID   WP_003182242.1    Uniprot ID   -
Organism   Bacillus licheniformis strain C5     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1025352..1035723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS05360 - 1025780..1026013 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  IRJ22_RS05365 recP/tkt 1026180..1028183 (+) 2004 WP_095240068.1 transketolase Machinery gene
  IRJ22_RS05370 sirA 1028338..1028775 (+) 438 WP_003182234.1 sporulation inhibitor of replication protein SirA -
  IRJ22_RS05375 - 1028860..1029078 (+) 219 WP_003182236.1 YneF family protein -
  IRJ22_RS05380 - 1029159..1029320 (-) 162 WP_202604361.1 aspartyl-phosphate phosphatase Spo0E family protein -
  IRJ22_RS05385 - 1029563..1030270 (+) 708 WP_003182240.1 cytochrome c biogenesis protein CcdA -
  IRJ22_RS05390 spo0A 1030352..1030723 (+) 372 WP_003182242.1 response regulator Regulator
  IRJ22_RS05395 - 1030797..1031291 (+) 495 WP_085959522.1 CcdC family protein -
  IRJ22_RS05400 - 1031327..1031755 (-) 429 WP_003182245.1 DUF2621 domain-containing protein -
  IRJ22_RS05405 - 1031960..1032367 (-) 408 WP_003182248.1 Hsp20/alpha crystallin family protein -
  IRJ22_RS05410 - 1032503..1032649 (-) 147 WP_003182250.1 small acid-soluble spore protein P -
  IRJ22_RS05415 sspO 1032691..1032837 (-) 147 WP_003182252.1 small acid-soluble spore protein O -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13923.42 Da        Isoelectric Point: 4.6948

>NTDB_id=441569 IRJ22_RS05390 WP_003182242.1 1030352..1030723(+) (spo0A) [Bacillus licheniformis strain C5]
MTRVLIVDDAKFMRDKIREILETEDLQVAGEAENGEEAVLLYQELQPDLVIMDITMPVKNGIEALKDMIQLNPKVKVIMC
TAMRQKRIVVEAIEAGAKDFIVKPFEETKVVEAIRHVLGNACR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=441569 IRJ22_RS05390 WP_003182242.1 1030352..1030723(+) (spo0A) [Bacillus licheniformis strain C5]
ATGACAAGGGTTTTAATTGTTGATGATGCAAAATTTATGAGAGATAAAATTAGAGAAATACTTGAAACAGAAGACTTGCA
AGTCGCGGGTGAAGCCGAGAACGGGGAAGAAGCTGTTTTGCTTTATCAAGAGCTGCAGCCGGACTTGGTTATCATGGATA
TTACGATGCCTGTGAAAAACGGGATAGAAGCTTTAAAGGATATGATCCAGCTGAACCCGAAAGTGAAAGTGATCATGTGT
ACGGCCATGCGGCAAAAGCGGATCGTCGTTGAGGCGATCGAAGCCGGAGCCAAGGACTTCATCGTCAAGCCTTTCGAGGA
AACGAAAGTCGTCGAAGCGATTCGGCATGTGCTCGGAAATGCTTGCAGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

36.585

100

0.366
  pilH Synechocystis sp. PCC 6803

36.585

100

0.366