Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   IRJ22_RS05365 Genome accession   NZ_CP064092
Coordinates   1026180..1028183 (+) Length   667 a.a.
NCBI ID   WP_095240068.1    Uniprot ID   -
Organism   Bacillus licheniformis strain C5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1021180..1033183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS05330 - 1021318..1022079 (+) 762 WP_003182215.1 hypothetical protein -
  IRJ22_RS05335 - 1022139..1022978 (+) 840 WP_003182218.1 thymidylate synthase -
  IRJ22_RS05340 nucA/comI 1023337..1023765 (+) 429 WP_003182220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IRJ22_RS05345 dinR/lexA 1023961..1024584 (-) 624 WP_003182222.1 transcriptional repressor LexA Regulator
  IRJ22_RS05350 yneA 1024737..1025048 (+) 312 WP_161658308.1 cell division suppressor protein YneA -
  IRJ22_RS05355 - 1025067..1025714 (+) 648 WP_003182227.1 YneB family resolvase-like protein -
  IRJ22_RS05360 - 1025780..1026013 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  IRJ22_RS05365 recP/tkt 1026180..1028183 (+) 2004 WP_095240068.1 transketolase Machinery gene
  IRJ22_RS05370 sirA 1028338..1028775 (+) 438 WP_003182234.1 sporulation inhibitor of replication protein SirA -
  IRJ22_RS05375 - 1028860..1029078 (+) 219 WP_003182236.1 YneF family protein -
  IRJ22_RS05380 - 1029159..1029320 (-) 162 WP_202604361.1 aspartyl-phosphate phosphatase Spo0E family protein -
  IRJ22_RS05385 - 1029563..1030270 (+) 708 WP_003182240.1 cytochrome c biogenesis protein CcdA -
  IRJ22_RS05390 spo0A 1030352..1030723 (+) 372 WP_003182242.1 response regulator Regulator
  IRJ22_RS05395 - 1030797..1031291 (+) 495 WP_085959522.1 CcdC family protein -
  IRJ22_RS05400 - 1031327..1031755 (-) 429 WP_003182245.1 DUF2621 domain-containing protein -
  IRJ22_RS05405 - 1031960..1032367 (-) 408 WP_003182248.1 Hsp20/alpha crystallin family protein -
  IRJ22_RS05410 - 1032503..1032649 (-) 147 WP_003182250.1 small acid-soluble spore protein P -
  IRJ22_RS05415 sspO 1032691..1032837 (-) 147 WP_003182252.1 small acid-soluble spore protein O -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 72666.81 Da        Isoelectric Point: 4.8350

>NTDB_id=441568 IRJ22_RS05365 WP_095240068.1 1026180..1028183(+) (recP/tkt) [Bacillus licheniformis strain C5]
MKTIELKSVATIRTLSIDAIEKAKSGHPGMPMGTAPMAYALWTKMMNVSPENPNWFNRDRFVLSAGHGSMLLYSMLHLSG
YDVSIEDLKNFRQWGSKTPGHPEFGHTPGVDATTGPLGQGIGMAVGMALAERHLAETYNRDDYRVVDHYTYSICGDGDLM
EGISSEAASLAGHLNLGRLIVLYDSNDISLDGELNRSFSENVKQRFEAMNWEVLYVEDGNNIAEITAAIEKAKQNEKQPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGSEEAKLTKEAYEWTYEEDFYVPSEVYEHFNETVKEAGKKKEAEWNELFSAYKK
AHPELAEELELAIKGELPEGWDQKVPVYEKGSSLASRASSGEVLNGIAQQVPFFFGGSADLAGSNKTTIKNGGDVSAKDY
ASRNIWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPIEQLA
SLRALPNLSVIRPADGNETAAAWKLALQSKDQPTALVLTRQNLPTIDQSAETAYEGVKKGAYVVSKSQNEKPEAILLASG
SEVGLALDAQSELQKEGIDVSVVSVPSWDRFDKQPAEYKNAVLPTDVTKRLAIEMGSPLGWERYTGTDGDILGIDQFGAS
APGETIMKEYGFTPANVVDRVKKLLNR

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=441568 IRJ22_RS05365 WP_095240068.1 1026180..1028183(+) (recP/tkt) [Bacillus licheniformis strain C5]
ATGAAAACGATTGAATTAAAATCTGTCGCAACAATACGAACACTCTCCATAGACGCGATTGAAAAAGCTAAATCCGGTCA
CCCCGGCATGCCGATGGGGACTGCTCCGATGGCTTATGCGCTTTGGACAAAAATGATGAATGTCAGCCCTGAAAATCCGA
ATTGGTTTAACAGGGACCGTTTTGTGCTTTCCGCCGGACACGGATCAATGCTTTTGTACAGCATGCTTCACTTAAGCGGA
TATGACGTTTCAATTGAAGACCTCAAAAATTTCCGCCAATGGGGAAGCAAAACTCCTGGGCATCCGGAATTCGGACATAC
TCCGGGTGTAGATGCGACTACAGGTCCGCTTGGCCAAGGAATCGGAATGGCTGTCGGAATGGCGCTTGCTGAACGTCACC
TTGCTGAAACTTACAACCGTGACGACTATCGCGTCGTTGACCATTATACATACAGCATTTGCGGTGACGGAGACTTGATG
GAGGGAATTTCATCCGAAGCGGCTTCGCTTGCGGGACATTTGAACCTCGGCCGTCTCATCGTGCTTTATGATTCAAATGA
CATTTCGCTTGACGGCGAACTAAACCGCTCATTCTCTGAAAATGTAAAGCAGCGCTTTGAAGCGATGAATTGGGAAGTGC
TTTATGTTGAAGACGGCAACAACATTGCCGAAATTACGGCGGCCATCGAGAAAGCGAAACAAAATGAAAAGCAGCCGACA
TTAATTGAAGTGAAAACAACGATCGGTTTCGGTTCTCCAAACCGTGCGGGCACATCCGGCGTCCACGGCGCTCCGCTCGG
ATCAGAAGAGGCGAAATTAACGAAGGAAGCGTATGAGTGGACATACGAAGAAGATTTTTATGTTCCTTCCGAAGTGTACG
AGCACTTTAACGAAACAGTGAAGGAAGCGGGCAAGAAAAAAGAGGCGGAATGGAACGAACTGTTCTCCGCATACAAGAAA
GCCCACCCGGAACTTGCCGAAGAGCTTGAACTGGCGATCAAAGGCGAGCTTCCTGAAGGATGGGATCAGAAAGTACCTGT
ATATGAAAAAGGAAGCAGCCTTGCTTCACGTGCATCCTCAGGTGAAGTGTTAAACGGAATCGCTCAACAAGTGCCGTTTT
TCTTTGGCGGATCCGCGGACTTGGCCGGTTCCAACAAAACGACAATCAAAAACGGCGGAGATGTTTCAGCGAAGGATTAC
GCCAGCAGAAATATCTGGTTCGGTGTAAGGGAATTTGCGATGGGAGCAGCTTTGAACGGAATGGCTCTTCACGGAGGCCT
CCGCGTATTCGGTGGAACGTTCTTCGTTTTCTCCGATTACTTGAGACCAGCGATTCGTCTTGCTGCATTGATGGGGCTTC
CTGTCACCTATGTATTTACACATGACAGCATTGCCGTCGGTGAAGACGGACCGACTCATGAGCCGATTGAACAGCTGGCA
TCACTTCGTGCGCTGCCGAACTTGTCCGTCATCAGACCTGCCGACGGAAATGAAACAGCAGCTGCCTGGAAGCTCGCGCT
TCAATCAAAAGACCAGCCGACTGCGCTTGTGTTGACACGCCAAAACTTGCCGACAATCGATCAGTCTGCTGAAACGGCTT
ATGAAGGCGTTAAAAAGGGTGCATATGTCGTTTCAAAAAGCCAAAACGAAAAACCGGAAGCGATCTTGCTTGCGAGCGGA
TCTGAAGTTGGCCTTGCGCTTGATGCACAAAGCGAGCTGCAAAAAGAAGGCATTGACGTATCCGTTGTCAGCGTTCCGTC
ATGGGATCGATTTGACAAGCAGCCGGCTGAATATAAAAACGCTGTTCTTCCAACTGATGTGACAAAGCGTCTCGCAATTG
AAATGGGATCGCCGCTCGGATGGGAGAGATATACAGGCACTGACGGGGACATTCTCGGAATCGACCAGTTCGGTGCATCA
GCTCCTGGCGAAACGATCATGAAAGAATACGGTTTTACGCCTGCGAATGTAGTTGACCGGGTGAAAAAACTGTTAAATCG
CTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(548-657)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

57.768

99.4

0.574