Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HHK01_RS15330 Genome accession   NZ_CP052135
Coordinates   3138144..3138677 (-) Length   177 a.a.
NCBI ID   WP_170008572.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3133144..3143677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS15305 - 3133283..3134251 (+) 969 WP_170008567.1 sugar phosphate isomerase/epimerase -
  HHK01_RS15310 rplI 3134338..3134784 (-) 447 WP_170008568.1 50S ribosomal protein L9 -
  HHK01_RS15315 - 3134781..3136754 (-) 1974 WP_170008569.1 DHH family phosphoesterase -
  HHK01_RS15320 - 3136775..3137713 (-) 939 WP_170008570.1 YybS family protein -
  HHK01_RS15325 rpsR 3137877..3138110 (-) 234 WP_170008571.1 30S ribosomal protein S18 -
  HHK01_RS15330 ssbA 3138144..3138677 (-) 534 WP_170008572.1 single-stranded DNA-binding protein Machinery gene
  HHK01_RS15335 rpsF 3138738..3139025 (-) 288 WP_170008573.1 30S ribosomal protein S6 -
  HHK01_RS15340 - 3139487..3139768 (-) 282 WP_228027607.1 transposase -
  HHK01_RS15345 - 3140039..3141148 (-) 1110 WP_170007902.1 IS4 family transposase -
  HHK01_RS15350 - 3141261..3141986 (-) 726 WP_170008574.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19597.48 Da        Isoelectric Point: 4.7248

>NTDB_id=441466 HHK01_RS15330 WP_170008572.1 3138144..3138677(-) (ssbA) [Bacillus fonticola strain CS13]
MLNRIVLVGRLTKDPDLRYTPNGVAVATFTLAVNRPFSNQQGEKEADFINCVVWRKQAENVANFLKKGSLAGVDGRIQTR
NFEGQDGRRVYITEVNAESVQFLEPRNAQGSGGGGGSVSPYGEPPREREYNGGGGYSQQPQPSRQNNNQKDYTRLDDDDP
FTKNGEPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=441466 HHK01_RS15330 WP_170008572.1 3138144..3138677(-) (ssbA) [Bacillus fonticola strain CS13]
ATGCTGAACCGTATCGTTCTAGTGGGCCGTCTGACAAAGGATCCTGATTTGCGATATACGCCAAACGGTGTAGCTGTAGC
GACATTTACACTCGCTGTTAATCGCCCTTTCTCGAACCAACAAGGGGAGAAGGAAGCGGATTTTATTAACTGTGTTGTGT
GGCGAAAGCAAGCCGAAAACGTCGCTAATTTCTTGAAAAAGGGAAGCTTAGCAGGTGTTGATGGACGCATTCAAACGCGC
AACTTTGAAGGACAAGATGGACGCCGTGTCTATATAACTGAAGTGAATGCAGAAAGTGTGCAGTTTTTAGAACCGCGAAA
CGCACAAGGCTCCGGTGGTGGTGGCGGGTCTGTTTCTCCGTATGGCGAGCCACCTCGTGAACGTGAATACAACGGTGGTG
GAGGATATAGCCAACAACCGCAACCATCTAGACAAAACAACAACCAAAAAGACTACACACGACTCGATGATGACGATCCT
TTCACGAAAAATGGTGAACCGATCGACATTTCGGACGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.537

100

0.655
  ssb Latilactobacillus sakei subsp. sakei 23K

52.542

100

0.525
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.887

0.367