Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   HHK01_RS13390 Genome accession   NZ_CP052135
Coordinates   2702344..2703483 (-) Length   379 a.a.
NCBI ID   WP_170008244.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2697344..2708483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS13365 - 2697454..2697882 (-) 429 WP_170008240.1 TIGR03826 family flagellar region protein -
  HHK01_RS13370 - 2698004..2698477 (-) 474 WP_170008241.1 ComF family protein -
  HHK01_RS13375 comFA 2698780..2699928 (-) 1149 WP_228027577.1 DEAD/DEAH box helicase Machinery gene
  HHK01_RS13380 - 2700470..2701330 (-) 861 WP_170008802.1 DegV family protein -
  HHK01_RS13385 degU 2701618..2702307 (-) 690 WP_170008243.1 response regulator transcription factor Regulator
  HHK01_RS13390 degS 2702344..2703483 (-) 1140 WP_170008244.1 sensor histidine kinase Regulator
  HHK01_RS13395 - 2703869..2704513 (+) 645 WP_170008245.1 YigZ family protein -
  HHK01_RS13400 - 2704725..2705729 (+) 1005 WP_228027578.1 LCP family protein -
  HHK01_RS13405 - 2706432..2707490 (+) 1059 WP_170008246.1 LCP family protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 44008.41 Da        Isoelectric Point: 6.6796

>NTDB_id=441458 HHK01_RS13390 WP_170008244.1 2702344..2703483(-) (degS) [Bacillus fonticola strain CS13]
MSRRLDGRALDLILDKMIRTVGDSKQEIYQISEASRDEFTSLTEQLKEVKIRVHETIHEGERIEVKLNYARTRLSEVSQQ
FEKYSEDEVREAYEYAHDLRTNLSLNRQQEKQLRERRDEIERRLLKLEETIQRADHLVSQITVVLNYLTVDLREVNRALE
DAKRKQDFGFQIIEAQEEERKKLSRDIHDGPAQMLANVILRSDLIERIHKEHGIDEAMKEIKSLKGMVRSALYEVRRIIY
DLRPMALDDLGLVPTLKKYLHTVEDYHKTVISFVTLGEEQRLPSKLEVALFRLVQEAVQNANKHANASEIQVKIERKRDF
ITVVVKDNGNGFEIGGEKAGSFGLMGMTERVELLEGKMKIDSTVGMGTTIRIVVPLKEK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=441458 HHK01_RS13390 WP_170008244.1 2702344..2703483(-) (degS) [Bacillus fonticola strain CS13]
ATGTCTCGAAGGCTAGACGGTCGCGCGCTCGATCTTATTCTCGATAAGATGATCCGGACGGTAGGCGATAGTAAGCAAGA
GATTTATCAGATTAGTGAAGCTTCTCGGGACGAATTTACTTCATTGACTGAACAGCTAAAAGAGGTGAAAATCCGCGTTC
ATGAGACCATTCATGAAGGTGAGCGGATCGAAGTGAAGCTGAATTACGCTAGAACGCGGCTTAGTGAAGTGAGCCAGCAG
TTTGAAAAGTATTCAGAAGATGAAGTGCGAGAAGCTTATGAATATGCCCATGATTTACGCACGAACCTTTCGCTGAACCG
CCAACAGGAAAAACAATTACGAGAGCGACGAGATGAGATTGAACGACGTCTACTCAAATTAGAAGAAACGATTCAACGGG
CGGATCATTTGGTAAGTCAAATTACAGTCGTACTAAACTACTTAACGGTCGACTTACGAGAAGTGAATCGAGCATTGGAA
GATGCAAAGAGAAAACAGGACTTTGGCTTTCAAATCATTGAAGCCCAAGAAGAAGAACGTAAAAAGCTGTCTCGAGATAT
TCATGACGGTCCTGCGCAGATGCTCGCGAATGTGATATTACGCTCAGATTTGATCGAACGCATTCATAAAGAGCATGGAA
TTGACGAGGCAATGAAAGAAATCAAGAGCCTAAAAGGGATGGTCCGCTCGGCATTGTATGAAGTTCGACGCATTATCTAT
GATCTTCGTCCTATGGCCCTGGACGATTTAGGGTTAGTGCCTACCCTCAAAAAGTACTTACATACTGTCGAAGACTATCA
TAAAACAGTGATCTCTTTTGTCACGCTTGGAGAAGAGCAAAGATTGCCCTCTAAGTTAGAAGTCGCCTTGTTCCGCCTCG
TTCAGGAAGCTGTGCAAAATGCGAACAAACACGCAAATGCTTCAGAAATTCAGGTGAAGATTGAACGAAAGCGGGACTTT
ATTACTGTTGTTGTGAAAGACAATGGAAATGGCTTTGAGATTGGCGGGGAGAAAGCTGGTTCTTTTGGACTGATGGGAAT
GACTGAGCGCGTCGAACTATTAGAAGGCAAGATGAAAATTGATTCGACAGTGGGAATGGGTACGACGATACGTATTGTCG
TTCCATTAAAAGAAAAGTAG

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(179-247)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(287-377)

Sensor protein DegS (DegS)

(11-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

59.103

100

0.591