Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HHK01_RS13385 Genome accession   NZ_CP052135
Coordinates   2701618..2702307 (-) Length   229 a.a.
NCBI ID   WP_170008243.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2696618..2707307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS13360 - 2697036..2697407 (+) 372 WP_170008239.1 VOC family protein -
  HHK01_RS13365 - 2697454..2697882 (-) 429 WP_170008240.1 TIGR03826 family flagellar region protein -
  HHK01_RS13370 - 2698004..2698477 (-) 474 WP_170008241.1 ComF family protein -
  HHK01_RS13375 comFA 2698780..2699928 (-) 1149 WP_228027577.1 DEAD/DEAH box helicase Machinery gene
  HHK01_RS13380 - 2700470..2701330 (-) 861 WP_170008802.1 DegV family protein -
  HHK01_RS13385 degU 2701618..2702307 (-) 690 WP_170008243.1 response regulator transcription factor Regulator
  HHK01_RS13390 degS 2702344..2703483 (-) 1140 WP_170008244.1 sensor histidine kinase Regulator
  HHK01_RS13395 - 2703869..2704513 (+) 645 WP_170008245.1 YigZ family protein -
  HHK01_RS13400 - 2704725..2705729 (+) 1005 WP_228027578.1 LCP family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25873.74 Da        Isoelectric Point: 6.8511

>NTDB_id=441457 HHK01_RS13385 WP_170008243.1 2701618..2702307(-) (degU) [Bacillus fonticola strain CS13]
MTNIIIIDDHQLFREGVKRILEFEKTFRIVAEGEDGSEALRLVEQFRPDVVIMDINMPETNGVEATRKLINRYPETKVII
LSIHDDESYVTHALKSGAMGYLLKDMDSEALVQAVKVVADGGSYLHPKVTHNLVREYRRLAEDEDAGKSAAKGFSPVEVR
RPLHLLTRRECEVLQLLTDGKSNRGIGDVLYISEKTVKNHVSNILQKLSVNDRTQAVVVAIKKGWVEIR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=441457 HHK01_RS13385 WP_170008243.1 2701618..2702307(-) (degU) [Bacillus fonticola strain CS13]
ATGACAAATATCATCATTATTGATGATCACCAATTGTTCCGTGAAGGTGTGAAGCGAATATTAGAATTTGAAAAAACGTT
TCGTATCGTTGCTGAGGGAGAAGACGGTTCGGAGGCTCTCCGACTTGTCGAGCAATTTCGCCCGGACGTTGTCATCATGG
ACATCAACATGCCGGAAACAAATGGGGTTGAAGCGACACGAAAACTCATTAATAGGTATCCGGAAACAAAGGTGATTATC
TTATCTATTCACGACGATGAATCGTATGTCACACATGCGCTGAAATCAGGTGCTATGGGATACCTGTTAAAGGATATGGA
TTCTGAAGCTCTCGTCCAAGCTGTAAAAGTGGTGGCAGACGGGGGGAGTTATTTGCACCCGAAAGTGACGCACAACTTGG
TAAGAGAATACAGAAGGCTAGCTGAAGATGAGGACGCGGGTAAGAGTGCTGCAAAGGGATTTTCACCGGTTGAAGTACGC
AGGCCCTTGCATTTGTTAACCCGCCGAGAATGTGAAGTGCTCCAACTATTGACGGATGGGAAAAGTAACCGCGGGATCGG
TGACGTTCTGTATATCAGTGAGAAAACAGTGAAAAACCATGTTAGTAACATCCTACAAAAATTAAGTGTGAACGACAGAA
CACAAGCGGTAGTCGTTGCGATTAAAAAGGGCTGGGTAGAAATACGTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

74.009

99.127

0.734