Detailed information NTG0044135

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: B739_RS05115
• Genome accession: NC_018609
• Coordinates: 1112314..1112898 (-)
• Length: 194 a.a.
• NCBI ID: WP_014937999.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer RA-CH-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1107314..1117898

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B739_RS05115 (B739_1043)	ruvA	1112314..1112898 (-)	585	WP_014937999.1	Holliday junction branch migration protein RuvA	Machinery gene
B739_RS05120 (B739_1044)	-	1113069..1114505 (-)	1437	WP_038694272.1	RagB/SusD family nutrient uptake outer membrane protein	-
B739_RS05125 (B739_1045)	-	1114519..1117449 (-)	2931	WP_038693793.1	SusC/RagA family TonB-linked outer membrane protein	-

Sequence

Protein

• Length: 194 a.a.
• Molecular weight: 21408.94 Da
• Isoelectric Point: 6.4970

>NTDB_id=44135 B739_RS05115 WP_014937999.1 1112314..1112898(-) (ruvA) [Riemerella anatipestifer RA-CH-1]
MIYSLRGIVQELSPTHLIIETGGVGYFVSVSVNTSKHFSIGKESLIYTQQIIREDAHLLYGFSELKEKEMFNLLISVNGV
GPASAMIMLSSLELREIAQAILSSNSAVLQKVKGIGTKTAQRIIIDLKDKVLHFGADESDISTVIDNKVKEESLSALEVL
GIPKKMSEKLADKILKQNPEIQTEDLVKQILKNI

Nucleotide

• Length: 585 bp

>NTDB_id=44135 B739_RS05115 WP_014937999.1 1112314..1112898(-) (ruvA) [Riemerella anatipestifer RA-CH-1]
ATGATTTACTCTCTACGAGGTATCGTTCAGGAGCTTAGCCCAACCCATTTAATTATAGAAACTGGTGGTGTAGGCTACTT
TGTAAGCGTTAGTGTAAACACTTCTAAACACTTTTCCATTGGGAAAGAATCTTTAATCTACACACAACAAATCATTCGAG
AAGACGCTCACTTATTGTACGGTTTTTCGGAGCTCAAAGAGAAAGAAATGTTTAACCTACTTATTTCTGTAAATGGTGTA
GGACCAGCCTCTGCTATGATTATGCTTTCCTCACTAGAATTAAGAGAAATAGCACAAGCCATACTCTCTAGCAATAGTGC
TGTATTACAAAAAGTAAAAGGTATAGGCACCAAAACTGCACAACGAATTATCATTGATTTAAAAGATAAAGTATTGCATT
TTGGAGCAGATGAATCTGATATTTCCACCGTTATTGATAATAAAGTAAAAGAAGAATCGTTATCTGCATTAGAAGTTTTA
GGAATTCCTAAAAAAATGTCAGAAAAATTAGCAGACAAAATTTTGAAACAAAATCCAGAAATTCAAACGGAAGATTTAGT
AAAACAAATTTTGAAAAATATTTAA

Domains

Predicted by InterProScan.

• RuvA N terminal domain (RuvA_N) (1-61)

• Helix-hairpin-helix domain (HHH_5) (71-129)

• RuvA, C-terminal domain (RuvA_C) (149-193)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	34.804	100	0.366
ruvA	Helicobacter pylori 26695	35.897	100	0.361