Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   HIN88_RS17010 Genome accession   NZ_CP051866
Coordinates   3547041..3547367 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Ab-C63     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3542041..3552367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN88_RS16990 (HIN88_16990) - 3542141..3542770 (-) 630 WP_064191965.1 FHA domain-containing protein -
  HIN88_RS16995 (HIN88_16995) gspD 3542811..3545087 (-) 2277 WP_024432837.1 type II secretion system secretin GspD -
  HIN88_RS17000 (HIN88_17000) - 3545129..3545965 (-) 837 WP_000870031.1 type II secretion system protein N -
  HIN88_RS17005 (HIN88_17005) gspN 3545965..3546708 (-) 744 WP_064191967.1 type II secretion system protein N -
  HIN88_RS17010 (HIN88_17010) hns 3547041..3547367 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  HIN88_RS17015 (HIN88_17015) - 3547562..3548002 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  HIN88_RS17020 (HIN88_17020) - 3548010..3549203 (-) 1194 WP_000681775.1 membrane protein -
  HIN88_RS17025 (HIN88_17025) - 3549213..3550052 (-) 840 WP_001230201.1 hypothetical protein -
  HIN88_RS17030 (HIN88_17030) - 3550061..3550828 (-) 768 WP_064191961.1 uroporphyrinogen-III synthase -
  HIN88_RS17035 (HIN88_17035) hemC 3550833..3551750 (-) 918 WP_031945568.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=441199 HIN88_RS17010 WP_000801427.1 3547041..3547367(-) (hns) [Acinetobacter baumannii strain Ab-C63]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=441199 HIN88_RS17010 WP_000801427.1 3547041..3547367(-) (hns) [Acinetobacter baumannii strain Ab-C63]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1