Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HIN88_RS16710 Genome accession   NZ_CP051866
Coordinates   3485083..3486309 (+) Length   408 a.a.
NCBI ID   WP_004842682.1    Uniprot ID   A0A9P2L3R8
Organism   Acinetobacter baumannii strain Ab-C63     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3480083..3491309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN88_RS16675 (HIN88_16675) rimP 3480748..3481272 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  HIN88_RS16695 (HIN88_16695) secG 3481914..3482243 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  HIN88_RS16700 (HIN88_16700) tpiA 3482256..3483050 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  HIN88_RS16705 (HIN88_16705) pilB 3483341..3485053 (+) 1713 WP_001274988.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HIN88_RS16710 (HIN88_16710) pilC 3485083..3486309 (+) 1227 WP_004842682.1 type II secretion system F family protein Machinery gene
  HIN88_RS19255 (HIN88_16715) pilD 3486309..3487169 (+) 861 WP_064191992.1 prepilin peptidase Machinery gene
  HIN88_RS16720 (HIN88_16720) coaE 3487171..3487767 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  HIN88_RS16725 (HIN88_16725) - 3487764..3488678 (-) 915 WP_064191991.1 DMT family transporter -
  HIN88_RS16730 (HIN88_16730) rlmB 3488714..3489463 (-) 750 WP_033853488.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  HIN88_RS16735 (HIN88_16735) - 3489565..3489891 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  HIN88_RS16740 (HIN88_16740) - 3489968..3491278 (-) 1311 WP_000753287.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44953.46 Da        Isoelectric Point: 9.9566

>NTDB_id=441198 HIN88_RS16710 WP_004842682.1 3485083..3486309(+) (pilC) [Acinetobacter baumannii strain Ab-C63]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=441198 HIN88_RS16710 WP_004842682.1 3485083..3486309(+) (pilC) [Acinetobacter baumannii strain Ab-C63]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCAGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGACGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAGTCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTAGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.265

100

0.993
  pilC Acinetobacter baylyi ADP1

86.275

100

0.863
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

47.368

97.794

0.463
  pilG Neisseria meningitidis 44/76-A

47.368

97.794

0.463
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36