Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HIN88_RS15550 Genome accession   NZ_CP051866
Coordinates   3230614..3231024 (-) Length   136 a.a.
NCBI ID   WP_031999766.1    Uniprot ID   A0A7U5A843
Organism   Acinetobacter baumannii strain Ab-C63     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3225614..3236024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN88_RS15520 (HIN88_15520) - 3225700..3225969 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  HIN88_RS15525 (HIN88_15525) rapZ 3225966..3226817 (-) 852 WP_000821671.1 RNase adapter RapZ -
  HIN88_RS15530 (HIN88_15530) panC 3226840..3227688 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  HIN88_RS15535 (HIN88_15535) panB 3227692..3228501 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HIN88_RS15540 (HIN88_15540) folK 3228547..3229029 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  HIN88_RS15545 (HIN88_15545) pcnB 3229026..3230489 (-) 1464 WP_001194203.1 polynucleotide adenylyltransferase PcnB -
  HIN88_RS15550 (HIN88_15550) comEA 3230614..3231024 (-) 411 WP_031999766.1 ComEA family DNA-binding protein Machinery gene
  HIN88_RS15555 (HIN88_15555) mazG 3230993..3231799 (-) 807 WP_000359487.1 nucleoside triphosphate pyrophosphohydrolase -
  HIN88_RS15560 (HIN88_15560) - 3231911..3232684 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  HIN88_RS15565 (HIN88_15565) - 3232729..3235035 (-) 2307 WP_064192070.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15686.95 Da        Isoelectric Point: 10.3828

>NTDB_id=441191 HIN88_RS15550 WP_031999766.1 3230614..3231024(-) (comEA) [Acinetobacter baumannii strain Ab-C63]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=441191 HIN88_RS15550 WP_031999766.1 3230614..3231024(-) (comEA) [Acinetobacter baumannii strain Ab-C63]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U5A843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.794

100

0.978
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404