Detailed information NTG0441178

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: IR210_RS23255
• Genome accession: NZ_CP063983
• Coordinates: 4873526..4874551 (+)
• Length: 341 a.a.
• NCBI ID: WP_194446121.1
• Uniprot ID: -
• Organism: Escherichia coli strain 25DN
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4868526..4879551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IR210_RS23235 (IR210_23240)	metJ	4869711..4870028 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
IR210_RS23240 (IR210_23245)	yiiX	4870088..4870696 (+)	609	WP_194446120.1	YiiX family permuted papain-like enzyme	-
IR210_RS23245 (IR210_23250)	rpmE	4870757..4870969 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
IR210_RS23250 (IR210_23255)	priA	4871172..4873370 (+)	2199	WP_001305041.1	primosomal protein N'	Machinery gene
IR210_RS23255 (IR210_23260)	cytR	4873526..4874551 (+)	1026	WP_194446121.1	DNA-binding transcriptional regulator CytR	Regulator
IR210_RS23260 (IR210_23265)	ftsN	4874643..4875602 (+)	960	WP_000068846.1	cell division protein FtsN	-
IR210_RS23265 (IR210_23270)	hslV	4875695..4876225 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
IR210_RS23270 (IR210_23275)	hslU	4876235..4877566 (+)	1332	WP_194446122.1	HslU--HslV peptidase ATPase subunit	-
IR210_RS23275 (IR210_23280)	menA	4877633..4878559 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
IR210_RS23280 (IR210_23285)	rraA	4878652..4879137 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
IR210_RS23285 (IR210_23290)	zapB	4879222..4879467 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37823.77 Da
• Isoelectric Point: 6.3842

>NTDB_id=441178 IR210_RS23255 WP_194446121.1 4873526..4874551(+) (cytR) [Escherichia coli strain 25DN]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLTQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=441178 IR210_RS23255 WP_194446121.1 4873526..4874551(+) (cytR) [Escherichia coli strain 25DN]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACTCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCACAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACTATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACAGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGTTGCTT
GATCTTACACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625