Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   HIN88_RS01630 Genome accession   NZ_CP051866
Coordinates   353725..354207 (+) Length   160 a.a.
NCBI ID   WP_001046421.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-C63     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348725..359207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN88_RS01620 (HIN88_01620) pilX 349028..349846 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HIN88_RS01625 (HIN88_01625) pilY1 349858..353712 (+) 3855 WP_000768952.1 PilC/PilY family type IV pilus protein Machinery gene
  HIN88_RS01630 (HIN88_01630) pilY2 353725..354207 (+) 483 WP_001046421.1 type IV pilin protein Machinery gene
  HIN88_RS01635 (HIN88_01635) pilE 354204..354629 (+) 426 WP_000788341.1 type IV pilin protein Machinery gene
  HIN88_RS01640 (HIN88_01640) rpsP 354776..355027 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HIN88_RS01645 (HIN88_01645) rimM 355047..355595 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  HIN88_RS01650 (HIN88_01650) trmD 355641..356381 (+) 741 WP_064193094.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HIN88_RS01655 (HIN88_01655) rplS 356589..356957 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  HIN88_RS01660 (HIN88_01660) - 357009..357950 (-) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  HIN88_RS01665 (HIN88_01665) - 358065..359096 (-) 1032 WP_064193095.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17563.78 Da        Isoelectric Point: 8.4834

>NTDB_id=441173 HIN88_RS01630 WP_001046421.1 353725..354207(+) (pilY2) [Acinetobacter baumannii strain Ab-C63]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=441173 HIN88_RS01630 WP_001046421.1 353725..354207(+) (pilY2) [Acinetobacter baumannii strain Ab-C63]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419