Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HIN88_RS01620 Genome accession   NZ_CP051866
Coordinates   349028..349846 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Ab-C63     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344028..354846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN88_RS01585 (HIN88_01585) - 344610..344740 (-) 131 Protein_302 hypothetical protein -
  HIN88_RS01590 (HIN88_01590) rpoZ 344779..345057 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HIN88_RS01595 (HIN88_01595) gmk 345130..345759 (-) 630 WP_000015937.1 guanylate kinase -
  HIN88_RS01600 (HIN88_01600) ispH 345882..346832 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HIN88_RS01605 (HIN88_01605) fimU 347002..347475 (+) 474 WP_001214064.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HIN88_RS01610 (HIN88_01610) pilV 347469..348029 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HIN88_RS01615 (HIN88_01615) pilW 348030..349031 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  HIN88_RS01620 (HIN88_01620) pilX 349028..349846 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HIN88_RS01625 (HIN88_01625) pilY1 349858..353712 (+) 3855 WP_000768952.1 PilC/PilY family type IV pilus protein Machinery gene
  HIN88_RS01630 (HIN88_01630) pilY2 353725..354207 (+) 483 WP_001046421.1 type IV pilin protein Machinery gene
  HIN88_RS01635 (HIN88_01635) pilE 354204..354629 (+) 426 WP_000788341.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=441171 HIN88_RS01620 WP_000149374.1 349028..349846(+) (pilX) [Acinetobacter baumannii strain Ab-C63]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=441171 HIN88_RS01620 WP_000149374.1 349028..349846(+) (pilX) [Acinetobacter baumannii strain Ab-C63]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993