Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HIN88_RS01605 Genome accession   NZ_CP051866
Coordinates   347002..347475 (+) Length   157 a.a.
NCBI ID   WP_001214064.1    Uniprot ID   A0A0J8UYN3
Organism   Acinetobacter baumannii strain Ab-C63     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342002..352475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN88_RS01580 (HIN88_01580) - 342465..344570 (-) 2106 WP_064193098.1 RelA/SpoT family protein -
  HIN88_RS01585 (HIN88_01585) - 344610..344740 (-) 131 Protein_302 hypothetical protein -
  HIN88_RS01590 (HIN88_01590) rpoZ 344779..345057 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HIN88_RS01595 (HIN88_01595) gmk 345130..345759 (-) 630 WP_000015937.1 guanylate kinase -
  HIN88_RS01600 (HIN88_01600) ispH 345882..346832 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HIN88_RS01605 (HIN88_01605) fimU 347002..347475 (+) 474 WP_001214064.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HIN88_RS01610 (HIN88_01610) pilV 347469..348029 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HIN88_RS01615 (HIN88_01615) pilW 348030..349031 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  HIN88_RS01620 (HIN88_01620) pilX 349028..349846 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16850.43 Da        Isoelectric Point: 8.5355

>NTDB_id=441168 HIN88_RS01605 WP_001214064.1 347002..347475(+) (fimU) [Acinetobacter baumannii strain Ab-C63]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=441168 HIN88_RS01605 WP_001214064.1 347002..347475(+) (fimU) [Acinetobacter baumannii strain Ab-C63]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCATT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCCGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8UYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994