Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HIN89_RS03060 Genome accession   NZ_CP051862
Coordinates   660183..660593 (+) Length   136 a.a.
NCBI ID   WP_002125991.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-C102     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 655183..665593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN89_RS03045 (HIN89_03045) - 656172..658478 (+) 2307 WP_002125975.1 RelA/SpoT family protein -
  HIN89_RS03050 (HIN89_03050) - 658523..659296 (-) 774 WP_002125966.1 SDR family oxidoreductase -
  HIN89_RS03055 (HIN89_03055) mazG 659408..660214 (+) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  HIN89_RS03060 (HIN89_03060) comEA 660183..660593 (+) 411 WP_002125991.1 ComEA family DNA-binding protein Machinery gene
  HIN89_RS03065 (HIN89_03065) pcnB 660718..662181 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  HIN89_RS03070 (HIN89_03070) folK 662178..662660 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  HIN89_RS03075 (HIN89_03075) panB 662706..663515 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HIN89_RS03080 (HIN89_03080) panC 663519..664367 (+) 849 WP_002125983.1 pantoate--beta-alanine ligase -
  HIN89_RS03085 (HIN89_03085) rapZ 664390..665241 (+) 852 WP_000821671.1 RNase adapter RapZ -
  HIN89_RS03090 (HIN89_03090) - 665238..665507 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15672.97 Da        Isoelectric Point: 10.4475

>NTDB_id=441129 HIN89_RS03060 WP_002125991.1 660183..660593(+) (comEA) [Acinetobacter baumannii strain Ab-C102]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=441129 HIN89_RS03060 WP_002125991.1 660183..660593(+) (comEA) [Acinetobacter baumannii strain Ab-C102]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404