Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HG549_RS07395 Genome accession   NZ_CP051857
Coordinates   1607530..1609743 (+) Length   737 a.a.
NCBI ID   WP_170028900.1    Uniprot ID   -
Organism   Pseudomonas sp. SK     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1602530..1614743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG549_RS07375 (HG549_07380) - 1604400..1605023 (+) 624 WP_170028896.1 glutathione S-transferase -
  HG549_RS07380 (HG549_07385) - 1605169..1606101 (+) 933 WP_170028897.1 ABC transporter ATP-binding protein -
  HG549_RS07385 (HG549_07390) - 1606098..1606877 (+) 780 WP_170028898.1 ABC transporter permease -
  HG549_RS07390 (HG549_07395) - 1606761..1607387 (-) 627 WP_170028899.1 DUF2062 domain-containing protein -
  HG549_RS07395 (HG549_07400) comA 1607530..1609743 (+) 2214 WP_170028900.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HG549_RS07400 (HG549_07405) exbB 1610526..1611161 (+) 636 WP_170028901.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HG549_RS07405 (HG549_07410) - 1611158..1611592 (+) 435 WP_170028902.1 biopolymer transporter ExbD -
  HG549_RS07410 (HG549_07415) lpxK 1611592..1612593 (+) 1002 WP_170028903.1 tetraacyldisaccharide 4'-kinase -
  HG549_RS07415 (HG549_07420) - 1612637..1612822 (+) 186 WP_003247142.1 Trm112 family protein -
  HG549_RS07420 (HG549_07425) kdsB 1612819..1613583 (+) 765 WP_170028904.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HG549_RS07425 (HG549_07430) - 1613583..1614047 (+) 465 WP_170028905.1 low molecular weight protein-tyrosine-phosphatase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79466.40 Da        Isoelectric Point: 11.1829

>NTDB_id=440953 HG549_RS07395 WP_170028900.1 1607530..1609743(+) (comA) [Pseudomonas sp. SK]
MRTGMFALALGLLCLGFFPALPSVGWLVLLAVGAGVCLFIRLWPLGCFLLGLCWALGSAQLALDDRLAPGLEGRTLWLEG
RVVGLPTRTAHGVRFELQGARSRRADLPQRLQLSWFDGPPLRAGEQWRLAATLQRPVGLLNPHGPDLEAQLLARRIGATG
TVKAGQLLAPVAGGWRDRLRQRLLAIDAHGREAALVALVLGDGTGLARHDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPSACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAALPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLAYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDGLFRLLALVAQQRPAWLPPVLPWWAWLLVCLGTWLLLLPRGVPLRGLGGVMLLALS
VPRATLPFGHVEVWQLDVGQGLAVLLRTRHHDLLYDAGPARGDTDLGERVVLPTLRKLGVRRLDLLLVSHAHADHAGGAA
AIARGLPVRRAIGGEALQDLQLQPCASGEQWAWDGVHFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAAAEQAWL
AATDTPRMDWLQAPHHGSRSSSTEAFIRATAPRGVLVSRGRNNSFGHPHAQVVERYRRHGVVMHDTAVEGALRLVLGRHG
AVESVREQRRFWRDSAR

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=440953 HG549_RS07395 WP_170028900.1 1607530..1609743(+) (comA) [Pseudomonas sp. SK]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTTTCCCCGCGTTGCCGTCGGTCGGATGGCT
GGTGCTACTGGCCGTTGGCGCTGGCGTCTGCCTGTTCATCCGGCTGTGGCCGCTGGGTTGCTTCCTGCTGGGCCTGTGCT
GGGCGCTTGGCTCGGCGCAGCTGGCCCTGGATGACCGCCTGGCGCCCGGGCTGGAAGGCCGTACCCTGTGGCTGGAGGGC
CGGGTGGTCGGCCTGCCGACCCGCACCGCGCACGGGGTACGCTTCGAGCTGCAAGGGGCCCGTTCGCGGCGCGCCGACCT
GCCGCAGCGCCTGCAGCTGAGCTGGTTCGACGGGCCACCGCTGCGCGCAGGAGAGCAGTGGCGGCTGGCGGCGACCCTGC
AGCGCCCGGTCGGGTTGCTCAACCCGCATGGGCCGGACCTGGAGGCCCAGTTGCTGGCGCGGCGCATCGGTGCCACCGGT
ACGGTCAAGGCCGGGCAACTGCTGGCGCCGGTTGCCGGCGGCTGGCGTGACCGCCTGCGCCAGCGCCTGCTGGCGATCGA
CGCCCATGGCCGCGAGGCGGCGTTGGTCGCCCTGGTGCTGGGCGACGGCACGGGCCTGGCGCGGCACGACTGGCAGACGT
TGCAGGCTACCGGCACGGTGCACCTGCTGGTGATTTCCGGGCAGCACATCGGCCTGGTCGCCGGCTTGCTGTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTGTGGCCGGCACGGCTGCCCTGGTTGCCCTCGGCGTGTGGCCTGGCCATGGCGGC
GGCGCTGGCCTACGGCTGGCTGGCCGGGGCTGGCGTGCCGGTGCAGCGCGCCTGCCTGATGCTGGCCGTGGTGCTGCTCT
GGCGCCTGCGCTTCCGCCATCTTGGCGCGGCCTTGCCCTTGCTGCTGGCGCTGGTTGCCGTGCTGCTGGTTGAGCCGCTG
GCGGCGCTGTTGCCCGGGTTCTGGCTGTCGTTTGCAGCGGTGGCCACGCTTGCCTACTGCTTCAGTGCGCGGCTGGGCGG
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATCGCCATCGGCTTGCTGCCGGTGCTGCTGGCCACCGGCT
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAACCTTGTGGCGGTACCGTGGGTCAGCCTGGCGGTACTGCCGCTGGCGTTG
CTGGGCACGCTGCTGTTGCCGCTGGGTGGGGTAGGCGAGGCATTGTTGTGGTTGGCGGGTGGCTTGCTCGACGGGTTGTT
CCGGCTGCTGGCGCTGGTGGCACAGCAGCGCCCGGCATGGCTGCCGCCGGTGCTGCCGTGGTGGGCCTGGCTGCTGGTCT
GCCTGGGTACCTGGCTATTGCTGCTGCCCCGTGGGGTACCGCTGCGTGGCCTGGGTGGGGTCATGCTGCTGGCATTGTCG
GTGCCGAGGGCGACGCTGCCGTTCGGGCACGTCGAGGTCTGGCAACTGGATGTCGGCCAGGGCCTGGCGGTGCTGTTGCG
TACGCGGCATCACGACCTGCTGTACGACGCCGGGCCGGCCAGGGGCGACACCGACCTGGGCGAACGGGTGGTGCTGCCGA
CCCTGCGCAAGCTGGGGGTGCGCCGCCTGGACCTGCTGCTGGTCAGCCACGCCCACGCCGACCATGCCGGCGGTGCTGCG
GCGATAGCGCGTGGTTTGCCGGTACGGCGCGCCATCGGTGGTGAAGCGCTGCAAGATCTCCAGTTGCAGCCGTGTGCCAG
TGGCGAGCAATGGGCATGGGATGGGGTGCATTTTTCGCTGTGGCGCTGGGCTGACGGGCAGAGCAGCAATGACCGGTCCT
GCGTGTTGCTGGTCGAGGCGCAGGGCGAGCGTTTGCTGTTGGCAGGCGATATGGAGGCGGCTGCCGAGCAGGCCTGGTTG
GCGGCCACCGACACACCCCGTATGGATTGGTTGCAGGCGCCGCATCATGGCAGCCGGAGTTCTTCCACCGAGGCGTTCAT
TCGGGCCACGGCGCCGCGTGGGGTGCTGGTGTCGCGAGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCG
AACGTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGTGGAGGGGGCGTTGCGGTTGGTGTTGGGGCGTCATGGG
GCGGTTGAAAGCGTGCGGGAACAGCGACGGTTCTGGCGGGATTCGGCACGGTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.889

97.693

0.575
  comA Ralstonia pseudosolanacearum GMI1000

35.075

100

0.383