Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HG549_RS07400 Genome accession   NZ_CP051857
Coordinates   1610526..1611161 (+) Length   211 a.a.
NCBI ID   WP_170028901.1    Uniprot ID   -
Organism   Pseudomonas sp. SK     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1605526..1616161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG549_RS07385 (HG549_07390) - 1606098..1606877 (+) 780 WP_170028898.1 ABC transporter permease -
  HG549_RS07390 (HG549_07395) - 1606761..1607387 (-) 627 WP_170028899.1 DUF2062 domain-containing protein -
  HG549_RS07395 (HG549_07400) comA 1607530..1609743 (+) 2214 WP_170028900.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HG549_RS07400 (HG549_07405) exbB 1610526..1611161 (+) 636 WP_170028901.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HG549_RS07405 (HG549_07410) - 1611158..1611592 (+) 435 WP_170028902.1 biopolymer transporter ExbD -
  HG549_RS07410 (HG549_07415) lpxK 1611592..1612593 (+) 1002 WP_170028903.1 tetraacyldisaccharide 4'-kinase -
  HG549_RS07415 (HG549_07420) - 1612637..1612822 (+) 186 WP_003247142.1 Trm112 family protein -
  HG549_RS07420 (HG549_07425) kdsB 1612819..1613583 (+) 765 WP_170028904.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HG549_RS07425 (HG549_07430) - 1613583..1614047 (+) 465 WP_170028905.1 low molecular weight protein-tyrosine-phosphatase -
  HG549_RS07430 (HG549_07435) murB 1614044..1615063 (+) 1020 WP_170028906.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22827.11 Da        Isoelectric Point: 7.3616

>NTDB_id=440954 HG549_RS07400 WP_170028901.1 1610526..1611161(+) (exbB) [Pseudomonas sp. SK]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFIGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=440954 HG549_RS07400 WP_170028901.1 1610526..1611161(+) (exbB) [Pseudomonas sp. SK]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTCTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGTTGGGCGAAATCCTTGCTGCCGGGCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAAGCTGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCTGCCATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATCGGCTCGCAGATGACCGCCAACGCAGCCGTACTGGCGGGCGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTACTCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825