Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HHJ99_RS03985 Genome accession   NZ_CP051643
Coordinates   821674..822546 (-) Length   290 a.a.
NCBI ID   WP_037541402.1    Uniprot ID   -
Organism   Staphylococcus caprae strain SY333     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 816674..827546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ99_RS03970 (HHJ99_03965) xerC 816963..817853 (-) 891 WP_037541405.1 tyrosine recombinase XerC -
  HHJ99_RS03975 (HHJ99_03970) trmFO 818087..819394 (-) 1308 WP_049402114.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HHJ99_RS03980 (HHJ99_03975) topA 819421..821496 (-) 2076 WP_167495587.1 type I DNA topoisomerase -
  HHJ99_RS03985 (HHJ99_03980) dprA 821674..822546 (-) 873 WP_037541402.1 DNA-processing protein DprA Machinery gene
  HHJ99_RS03990 (HHJ99_03985) sucD 822810..823718 (-) 909 WP_002442537.1 succinate--CoA ligase subunit alpha -
  HHJ99_RS03995 (HHJ99_03990) sucC 823740..824906 (-) 1167 WP_002442536.1 ADP-forming succinate--CoA ligase subunit beta -
  HHJ99_RS04000 (HHJ99_03995) - 825014..825784 (-) 771 WP_002442534.1 ribonuclease HII -
  HHJ99_RS04005 (HHJ99_04000) ylqF 825768..826652 (-) 885 WP_170080914.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33821.84 Da        Isoelectric Point: 8.8335

>NTDB_id=440209 HHJ99_RS03985 WP_037541402.1 821674..822546(-) (dprA) [Staphylococcus caprae strain SY333]
MIQHTLLKLYWANFTTTQVHQIIDFYPDFSLENEQTRMDIIKDWVLKQNSHALQRKLDQFKMLKTEYLYNYMKRIKLKYV
TYYDKDYPLLLKEIYHFPYVIFYKGTKQLFNQPHTLAVIGSRKSTSYTTQALEYLFPSFQQIQMTIISGLAYGADSVAHQ
VALKYHLPTIGVLGFGHDYHYPQSTYQLRDKIEKSGLVLSEYPPHSAISKYKFPERNRLISGLSRGLLITEAEEKSGSQI
TVDCALEQNRNVYVLPGSMFNQMTKGNLLRLEEGAQVVLDESSILTDYTF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=440209 HHJ99_RS03985 WP_037541402.1 821674..822546(-) (dprA) [Staphylococcus caprae strain SY333]
TTGATTCAACACACTTTATTAAAACTTTATTGGGCTAATTTCACTACAACGCAAGTACATCAAATCATTGATTTCTATCC
TGACTTTTCCTTGGAAAATGAACAAACAAGAATGGATATTATAAAAGATTGGGTATTAAAACAAAATTCCCACGCATTGC
AAAGAAAACTTGATCAATTTAAAATGCTAAAAACTGAGTATTTATACAACTATATGAAACGTATAAAACTAAAATATGTG
ACTTACTATGACAAAGATTATCCTTTACTTCTCAAAGAAATCTATCATTTTCCATACGTAATTTTTTATAAAGGAACCAA
ACAATTGTTTAATCAACCTCATACATTAGCTGTAATCGGCTCTCGTAAATCTACTTCATATACGACACAAGCTTTAGAGT
ATCTTTTTCCTTCATTTCAACAAATTCAAATGACTATAATTTCTGGTTTAGCATACGGCGCAGATAGTGTAGCGCATCAA
GTCGCTCTCAAATACCATTTACCCACCATAGGAGTTCTGGGATTCGGTCATGATTATCACTATCCTCAATCCACATATCA
ATTAAGAGATAAGATTGAAAAAAGTGGATTAGTATTAAGTGAATATCCTCCTCATTCAGCAATCAGTAAGTATAAATTTC
CAGAAAGAAATAGATTGATAAGTGGGCTTTCACGTGGCTTACTTATTACGGAAGCTGAAGAAAAAAGTGGCAGTCAAATT
ACTGTTGATTGTGCTTTAGAACAAAATCGAAATGTGTATGTGTTACCTGGATCCATGTTTAATCAAATGACAAAGGGAAA
TTTACTTAGATTAGAAGAAGGTGCTCAAGTCGTATTAGATGAAAGCAGCATTTTAACAGACTATACATTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.292

99.31

0.569
  dprA Staphylococcus aureus N315

57.292

99.31

0.569
  dprA Streptococcus mutans UA159

36.552

100

0.366