Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HHJ56_RS07620 Genome accession   NZ_CP051642
Coordinates   1638320..1639534 (-) Length   404 a.a.
NCBI ID   WP_081637525.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1633320..1644534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ56_RS07595 (HHJ56_07595) - 1634054..1634389 (+) 336 WP_017807091.1 carboxymuconolactone decarboxylase family protein -
  HHJ56_RS07600 (HHJ56_07600) - 1634545..1635906 (-) 1362 WP_035686956.1 sodium:alanine symporter family protein -
  HHJ56_RS07605 (HHJ56_07605) - 1636384..1636650 (-) 267 WP_035686958.1 GNAT family N-acetyltransferase -
  HHJ56_RS11800 yacG 1636661..1636864 (-) 204 WP_046097598.1 DNA gyrase inhibitor YacG -
  HHJ56_RS07610 (HHJ56_07610) coaE 1636868..1637485 (-) 618 Protein_1478 dephospho-CoA kinase -
  HHJ56_RS07615 (HHJ56_07615) - 1637628..1638323 (-) 696 WP_035686962.1 A24 family peptidase -
  HHJ56_RS07620 (HHJ56_07620) pilC 1638320..1639534 (-) 1215 WP_081637525.1 type II secretion system F family protein Machinery gene
  HHJ56_RS07625 (HHJ56_07625) manX 1639920..1640903 (+) 984 WP_035686968.1 PTS mannose transporter subunit IIAB -
  HHJ56_RS07630 (HHJ56_07630) - 1640916..1641719 (+) 804 WP_017807082.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  HHJ56_RS07635 (HHJ56_07635) - 1641733..1642569 (+) 837 WP_017807081.1 PTS mannose transporter subunit IID -
  HHJ56_RS07640 (HHJ56_07640) - 1642664..1643218 (+) 555 WP_046097319.1 YobD family protein -
  HHJ56_RS07645 (HHJ56_07645) manA 1643221..1644429 (+) 1209 WP_035686970.1 mannose-6-phosphate isomerase, class I -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 46376.14 Da        Isoelectric Point: 9.9694

>NTDB_id=440175 HHJ56_RS07620 WP_081637525.1 1638320..1639534(-) (pilC) [Avibacterium paragallinarum strain ADL-AP01]
MKLFKWKAVNQLQQKQQGMIVAKNEDIAKTLLFNRKLQNIKLQRNWQFSRKPKLNELYEFINQLALLLKASLPLKQSLLL
LQRDCTIIQLNIWISEIISALDSGLSFSQSIEKQGKYFSQQELQLLKVGEMTASLPQVCHNIAQYRQRSLKLKRKVQKIL
LYPIVVFCISSILTILLLVFVVPQFAEMYEANHSQLPSFTVFLIALSELLQTYLLHSILLVVLCVIFIRIRLKHSQRLVR
LKNQCIFYSPILGKITKLSRLINFSGTLSLMLYAKVPLNIALQSFLPKQASWQIQKSYVGDQFLNQAIETALYWLNLGYS
LSDSVSSDFFPLEAQQMLKIGEESGQVAQMLQHISEKYQQDLDHQVDLLSQLLEPMLMLIIGGLIGAVLLGMYLPIFNIG
AMIQ

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=440175 HHJ56_RS07620 WP_081637525.1 1638320..1639534(-) (pilC) [Avibacterium paragallinarum strain ADL-AP01]
ATGAAATTATTTAAATGGAAAGCAGTTAATCAATTGCAACAAAAACAGCAAGGAATGATTGTCGCCAAAAATGAAGATAT
AGCTAAAACGCTCTTATTTAATCGAAAACTACAAAATATTAAGCTACAACGCAACTGGCAATTTTCGCGTAAACCAAAAT
TAAATGAGCTTTATGAATTCATAAATCAATTGGCTCTATTATTGAAAGCGTCTCTTCCGCTTAAACAAAGTTTATTGTTG
TTACAGCGAGATTGTACAATTATTCAATTAAATATCTGGATTAGTGAAATTATTTCTGCATTAGATAGTGGATTAAGCTT
TTCTCAGTCAATAGAAAAACAAGGTAAATATTTTTCTCAACAAGAGTTGCAACTTTTAAAAGTTGGCGAAATGACGGCAT
CACTTCCTCAAGTTTGCCACAATATTGCACAATACCGACAACGCTCATTAAAGTTGAAAAGAAAAGTCCAGAAAATCTTA
CTTTACCCTATAGTTGTGTTTTGTATTTCTTCAATTTTAACCATTCTTTTATTAGTTTTTGTTGTGCCACAATTTGCTGA
GATGTACGAGGCTAATCATAGCCAGTTGCCTTCTTTTACTGTCTTTTTAATTGCATTATCAGAGTTACTACAAACTTATT
TGCTACACAGTATTTTATTGGTCGTTTTATGTGTTATTTTTATTCGTATACGTTTGAAACATTCTCAGCGTCTTGTGCGA
TTAAAGAATCAGTGTATTTTTTATTCTCCTATATTAGGAAAAATAACAAAACTCTCTCGTCTCATTAATTTTAGCGGGAC
CTTATCTTTAATGTTGTATGCTAAAGTGCCATTAAATATTGCTTTACAGTCTTTTTTACCTAAACAAGCTAGCTGGCAGA
TCCAAAAAAGTTATGTGGGCGATCAATTTTTGAACCAAGCCATAGAAACAGCATTGTATTGGCTTAATTTAGGATATAGC
TTATCTGATAGCGTTTCTAGCGATTTTTTTCCACTTGAAGCTCAGCAAATGTTAAAAATTGGTGAGGAAAGTGGTCAAGT
GGCTCAAATGTTGCAGCATATTTCGGAGAAATATCAACAAGATCTTGATCACCAAGTGGATCTGTTATCCCAATTATTAG
AGCCGATGTTGATGCTAATTATTGGCGGATTGATTGGTGCGGTGCTGCTCGGAATGTACCTCCCTATTTTTAATATCGGA
GCAATGATCCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(264-395)

Type II secretion system (T2SS), protein F (T2SSF)

(60-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

52.109

99.752

0.52
  pilC Haemophilus influenzae 86-028NP

51.365

99.752

0.512
  pilC Glaesserella parasuis strain SC1401

41.397

99.257

0.411