Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HHJ57_RS07620 Genome accession   NZ_CP051641
Coordinates   1638904..1640169 (-) Length   421 a.a.
NCBI ID   WP_254431779.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP02     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1633904..1645169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ57_RS07595 (HHJ57_07595) - 1634638..1634973 (+) 336 WP_017807091.1 carboxymuconolactone decarboxylase family protein -
  HHJ57_RS07600 (HHJ57_07600) - 1635129..1636490 (-) 1362 WP_035686956.1 sodium:alanine symporter family protein -
  HHJ57_RS07605 (HHJ57_07605) - 1636968..1637234 (-) 267 WP_035686958.1 GNAT family N-acetyltransferase -
  HHJ57_RS11785 yacG 1637245..1637448 (-) 204 WP_046097598.1 DNA gyrase inhibitor YacG -
  HHJ57_RS07610 (HHJ57_07610) coaE 1637452..1638069 (-) 618 Protein_1478 dephospho-CoA kinase -
  HHJ57_RS07615 (HHJ57_07615) - 1638212..1638907 (-) 696 WP_035686962.1 A24 family peptidase -
  HHJ57_RS07620 (HHJ57_07620) pilC 1638904..1640169 (-) 1266 WP_254431779.1 type II secretion system F family protein Machinery gene
  HHJ57_RS07625 (HHJ57_07625) manX 1640504..1641487 (+) 984 WP_035686968.1 PTS mannose transporter subunit IIAB -
  HHJ57_RS07630 (HHJ57_07630) - 1641500..1642303 (+) 804 WP_017807082.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  HHJ57_RS07635 (HHJ57_07635) - 1642317..1643153 (+) 837 WP_017807081.1 PTS mannose transporter subunit IID -
  HHJ57_RS07640 (HHJ57_07640) - 1643248..1643802 (+) 555 WP_046097319.1 YobD family protein -
  HHJ57_RS07645 (HHJ57_07645) manA 1643805..1645013 (+) 1209 WP_035686970.1 mannose-6-phosphate isomerase, class I -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 48410.77 Da        Isoelectric Point: 10.0526

>NTDB_id=440147 HHJ57_RS07620 WP_254431779.1 1638904..1640169(-) (pilC) [Avibacterium paragallinarum strain ADL-AP02]
MKDFVILCLKCHMKKSKMKLFKWKAVNQLQQKQQGMIVAKNEDIAKTLLFNRKLQNIKLQRNWQFSRKPKLNELYEFINQ
LALLLKASLPLKQSLLLLQRDCTIIQLNIWISEIISALDSGLSFSQSIEKQGKYFSQQELQLLKVGEMTASLPQVCHNIA
QYRQRSLKLKRKVQKILLYPIVVFCISSILTILLLVFVVPQFAEMYEANHSQLPSFTVFLIALSELLQTYLLHSILLVVL
CVIFIRIRLKHSQRLVRLKNQCIFYSPILGKITKLSRLINFSGTLSLMLYAKVPLNIALQSFLPKQASWQIQKSYVGDQF
LNQAIETALYWLNLGYSLSDSVSSDFFPLEAQQMLKIGEESGQVAQMLQHISEKYQQDLDHQVDLLSQLLEPMLMLIIGG
LIGAVLLGMYLPIFNIGAMIQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=440147 HHJ57_RS07620 WP_254431779.1 1638904..1640169(-) (pilC) [Avibacterium paragallinarum strain ADL-AP02]
ATGAAAGATTTTGTTATTTTATGCTTGAAGTGCCATATGAAGAAATCAAAGATGAAATTATTTAAATGGAAAGCAGTTAA
TCAATTGCAACAAAAACAGCAAGGAATGATTGTCGCCAAAAATGAAGATATAGCTAAAACGCTCTTATTTAATCGAAAAC
TACAAAATATTAAGCTACAACGCAACTGGCAATTTTCGCGTAAACCAAAATTAAATGAGCTTTATGAATTCATAAATCAA
TTGGCTCTATTATTGAAAGCGTCTCTTCCGCTTAAACAAAGTTTATTGTTGTTACAGCGAGATTGTACAATTATTCAATT
AAATATCTGGATTAGTGAAATTATTTCTGCATTAGATAGTGGATTAAGCTTTTCTCAGTCAATAGAAAAACAAGGTAAAT
ATTTTTCTCAACAAGAGTTGCAACTTTTAAAAGTTGGCGAAATGACGGCATCACTTCCTCAAGTTTGCCACAATATTGCA
CAATACCGACAACGCTCATTAAAGTTGAAAAGAAAAGTCCAGAAAATCTTACTTTACCCTATAGTTGTGTTTTGTATTTC
TTCAATTTTAACCATTCTTTTATTAGTTTTTGTTGTGCCACAATTTGCTGAGATGTACGAGGCTAATCATAGCCAGTTGC
CTTCTTTTACTGTCTTTTTAATTGCATTATCAGAGTTACTACAAACTTATTTGCTACACAGTATTTTATTGGTCGTTTTA
TGTGTTATTTTTATTCGTATACGTTTGAAACATTCTCAGCGTCTTGTGCGATTAAAGAATCAGTGTATTTTTTATTCTCC
TATATTAGGAAAAATAACAAAACTCTCTCGTCTCATTAATTTTAGCGGGACCTTATCTTTAATGTTGTATGCTAAAGTGC
CATTAAATATTGCTTTACAGTCTTTTTTACCTAAACAAGCTAGCTGGCAGATCCAAAAAAGTTATGTGGGCGATCAATTT
TTGAACCAAGCCATAGAAACAGCATTGTATTGGCTTAATTTAGGATATAGCTTATCTGATAGCGTTTCTAGCGATTTTTT
TCCACTTGAAGCTCAGCAAATGTTAAAAATTGGTGAGGAAAGTGGTCAAGTGGCTCAAATGTTGCAGCATATTTCGGAGA
AATATCAACAAGATCTTGATCACCAAGTGGATCTGTTATCCCAATTATTAGAGCCGATGTTGATGCTAATTATTGGCGGA
TTGATTGGTGCGGTGCTGCTCGGAATGTACCTCCCTATTTTTAATATCGGAGCAATGATCCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

52.109

95.724

0.499
  pilC Haemophilus influenzae 86-028NP

51.365

95.724

0.492
  pilC Glaesserella parasuis strain SC1401

41.397

95.249

0.394