Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IQS22_RS20145 Genome accession   NZ_CP063479
Coordinates   4201058..4201795 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EM06-18-14     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4196058..4206795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS22_RS20130 (IQS22_20140) clpC 4196512..4199085 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  IQS22_RS20135 (IQS22_20145) yfiH 4199215..4199946 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  IQS22_RS20140 (IQS22_20150) rluD 4199943..4200923 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IQS22_RS20145 (IQS22_20155) comL 4201058..4201795 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IQS22_RS20150 (IQS22_20160) raiA 4202066..4202407 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IQS22_RS20155 (IQS22_20165) pheL 4202511..4202558 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IQS22_RS20160 (IQS22_20170) pheA 4202657..4203817 (+) 1161 WP_000200098.1 bifunctional chorismate mutase/prephenate dehydratase -
  IQS22_RS20165 (IQS22_20175) tyrA 4203860..4204981 (-) 1122 WP_000225217.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IQS22_RS20170 (IQS22_20180) aroF 4204992..4206062 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IQS22_RS20175 (IQS22_20185) yfiL 4206272..4206665 (+) 394 Protein_3980 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=439930 IQS22_RS20145 WP_000197686.1 4201058..4201795(+) (comL) [Escherichia coli strain EM06-18-14]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=439930 IQS22_RS20145 WP_000197686.1 4201058..4201795(+) (comL) [Escherichia coli strain EM06-18-14]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376