Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HG264_RS06035 Genome accession   NZ_CP051625
Coordinates   1269235..1269909 (-) Length   224 a.a.
NCBI ID   WP_169406804.1    Uniprot ID   A0A7Z2V2K2
Organism   Pseudomonas sp. gcc21     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1264235..1274909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG264_RS06005 (HG264_06000) murB 1265323..1266345 (-) 1023 WP_169406800.1 UDP-N-acetylmuramate dehydrogenase -
  HG264_RS06010 (HG264_06005) - 1266333..1266830 (-) 498 WP_169406801.1 low molecular weight protein-tyrosine-phosphatase -
  HG264_RS06015 (HG264_06010) kdsB 1266830..1267588 (-) 759 WP_372240203.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HG264_RS06020 (HG264_06015) - 1267590..1267775 (-) 186 WP_169406802.1 Trm112 family protein -
  HG264_RS06025 (HG264_06020) lpxK 1267797..1268777 (-) 981 WP_169409029.1 tetraacyldisaccharide 4'-kinase -
  HG264_RS06030 (HG264_06025) - 1268801..1269232 (-) 432 WP_169406803.1 biopolymer transporter ExbD -
  HG264_RS06035 (HG264_06030) exbB 1269235..1269909 (-) 675 WP_169406804.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HG264_RS06040 (HG264_06035) - 1269990..1272242 (-) 2253 WP_169406805.1 DNA internalization-related competence protein ComEC/Rec2 -
  HG264_RS06045 (HG264_06040) - 1272342..1272866 (+) 525 WP_169406806.1 DUF2062 domain-containing protein -
  HG264_RS06050 (HG264_06045) - 1272889..1273380 (-) 492 WP_169406807.1 Lrp/AsnC ligand binding domain-containing protein -
  HG264_RS06055 (HG264_06050) - 1273525..1274823 (+) 1299 WP_169406808.1 D-amino acid dehydrogenase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23877.13 Da        Isoelectric Point: 9.7204

>NTDB_id=439929 HG264_RS06035 WP_169406804.1 1269235..1269909(-) (exbB) [Pseudomonas sp. gcc21]
MWELISAGGWLMLPILVSSVIAVAIVIERLWTLRSSKVAPPSLLGQVWRWVKEGQMDSVKLKTLRADSPLGEVLAAGLAN
SRHGREIMKESIQEAAGKVIHEMERYLSTLGTIAAITPLLGLLGTVVGMIDVFSAIMAQGTGNTGVLAGGISKALMTTAA
GLTVAIPALFFHRFLMRRIDELVIAMEQEATKLVEVIQGNRDVDASAVAQEGAPLRPGSVRKGA

Nucleotide


Download         Length: 675 bp        

>NTDB_id=439929 HG264_RS06035 WP_169406804.1 1269235..1269909(-) (exbB) [Pseudomonas sp. gcc21]
GTGTGGGAATTGATCAGTGCGGGTGGTTGGCTAATGCTGCCAATCCTGGTGTCGTCGGTAATCGCCGTTGCTATTGTAAT
AGAGAGACTATGGACGCTGCGTAGCAGCAAAGTCGCACCGCCGAGCCTGCTTGGGCAGGTCTGGCGCTGGGTCAAGGAAG
GCCAGATGGATTCGGTGAAACTGAAAACACTGCGCGCCGACTCACCGCTGGGCGAGGTCCTCGCCGCCGGCTTGGCGAAC
TCACGTCATGGCCGTGAAATCATGAAGGAAAGCATCCAGGAAGCGGCCGGTAAGGTCATTCACGAGATGGAGCGTTACCT
CAGCACGTTGGGCACCATCGCTGCCATTACGCCGCTGCTTGGTCTGCTCGGTACGGTGGTCGGTATGATCGATGTTTTCA
GCGCGATCATGGCCCAGGGTACCGGTAATACCGGCGTGCTCGCAGGAGGCATCTCCAAAGCGTTGATGACCACCGCAGCG
GGTCTGACCGTAGCGATTCCGGCGTTGTTCTTTCATCGCTTCCTGATGCGTCGCATCGATGAGCTGGTGATCGCTATGGA
GCAGGAAGCCACCAAGCTGGTCGAGGTCATCCAGGGTAATCGTGATGTCGACGCCTCTGCAGTCGCTCAGGAGGGCGCTC
CGCTGCGTCCCGGCAGCGTTCGCAAGGGAGCCTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2V2K2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

70.588

91.071

0.643