Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HG574_RS01650 Genome accession   NZ_CP051541
Coordinates   344845..345645 (+) Length   266 a.a.
NCBI ID   WP_202145024.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-001     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 339845..350645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG574_RS01615 (HG574_01615) pseH 340344..340886 (+) 543 WP_202145020.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  HG574_RS01620 (HG574_01620) - 340819..341757 (-) 939 WP_202145021.1 tetraacyldisaccharide 4'-kinase -
  HG574_RS01625 (HG574_01625) - 341754..342536 (-) 783 WP_202145022.1 NAD+ synthase -
  HG574_RS01635 (HG574_01635) ilvC 342785..343777 (+) 993 WP_202145023.1 ketol-acid reductoisomerase -
  HG574_RS01640 (HG574_01640) minD 343802..344608 (+) 807 WP_121038031.1 septum site-determining protein MinD -
  HG574_RS01645 (HG574_01645) minE 344605..344838 (+) 234 WP_000051430.1 cell division topological specificity factor MinE -
  HG574_RS01650 (HG574_01650) dprA 344845..345645 (+) 801 WP_202145024.1 DNA-processing protein DprA Machinery gene
  HG574_RS01655 (HG574_01655) dprB 345642..346046 (+) 405 WP_202145025.1 Holliday junction resolvase RuvX Machinery gene
  HG574_RS01660 (HG574_01660) - 346337..347113 (+) 777 WP_202145026.1 tetratricopeptide repeat protein -
  HG574_RS01665 (HG574_01665) - 347300..347638 (+) 339 WP_202145027.1 hypothetical protein -
  HG574_RS01670 (HG574_01670) - 347622..348182 (+) 561 WP_202145028.1 hypothetical protein -
  HG574_RS01675 (HG574_01675) - 348308..349189 (-) 882 WP_202145029.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29876.85 Da        Isoelectric Point: 8.8810

>NTDB_id=439684 HG574_RS01650 WP_202145024.1 344845..345645(+) (dprA) [Helicobacter pylori strain LIM-001]
MKSNFQYSTLENIPKAFDMLKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAKGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=439684 HG574_RS01650 WP_202145024.1 344845..345645(+) (dprA) [Helicobacter pylori strain LIM-001]
ATGAAAAGTAACTTCCAATACAGCACGCTAGAAAATATCCCTAAAGCCTTTGACATGCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTAGCTATCATCGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCTTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAGCCTTTATTTGTTTTACCCCAACGCTTAAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTAAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCCAAAAACCCAAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.617

100

0.966
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.115

84.962

0.417