Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG574_RS01655 Genome accession   NZ_CP051541
Coordinates   345642..346046 (+) Length   134 a.a.
NCBI ID   WP_202145025.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 340642..351046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG574_RS01620 (HG574_01620) - 340819..341757 (-) 939 WP_202145021.1 tetraacyldisaccharide 4'-kinase -
  HG574_RS01625 (HG574_01625) - 341754..342536 (-) 783 WP_202145022.1 NAD+ synthase -
  HG574_RS01635 (HG574_01635) ilvC 342785..343777 (+) 993 WP_202145023.1 ketol-acid reductoisomerase -
  HG574_RS01640 (HG574_01640) minD 343802..344608 (+) 807 WP_121038031.1 septum site-determining protein MinD -
  HG574_RS01645 (HG574_01645) minE 344605..344838 (+) 234 WP_000051430.1 cell division topological specificity factor MinE -
  HG574_RS01650 (HG574_01650) dprA 344845..345645 (+) 801 WP_202145024.1 DNA-processing protein DprA Machinery gene
  HG574_RS01655 (HG574_01655) dprB 345642..346046 (+) 405 WP_202145025.1 Holliday junction resolvase RuvX Machinery gene
  HG574_RS01660 (HG574_01660) - 346337..347113 (+) 777 WP_202145026.1 tetratricopeptide repeat protein -
  HG574_RS01665 (HG574_01665) - 347300..347638 (+) 339 WP_202145027.1 hypothetical protein -
  HG574_RS01670 (HG574_01670) - 347622..348182 (+) 561 WP_202145028.1 hypothetical protein -
  HG574_RS01675 (HG574_01675) - 348308..349189 (-) 882 WP_202145029.1 RluA family pseudouridine synthase -
  HG574_RS01680 (HG574_01680) recJ 349189..350739 (-) 1551 WP_202145030.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15223.71 Da        Isoelectric Point: 9.1627

>NTDB_id=439685 HG574_RS01655 WP_202145025.1 345642..346046(+) (dprB) [Helicobacter pylori strain LIM-001]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYDNLEHLGKKNKRLAVKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439685 HG574_RS01655 WP_202145025.1 345642..346046(+) (dprB) [Helicobacter pylori strain LIM-001]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCACGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGACAATTTGGAGCATTTGGGTAAGAAAAACAAGCGACT
CGCTGTCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAACGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94