Detailed information NTG0439638

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG576_RS00220
• Genome accession: NZ_CP051539
• Coordinates: 38702..39832 (+)
• Length: 376 a.a.
• NCBI ID: WP_077654994.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-003
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33702..44832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG576_RS00185 (HG576_00185)	panD	34148..34501 (+)	354	WP_000142277.1	aspartate 1-decarboxylase	-
HG576_RS00190 (HG576_00190)	-	34504..34806 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HG576_RS00195 (HG576_00195)	-	34806..35810 (+)	1005	WP_202139214.1	PDZ domain-containing protein	-
HG576_RS00200 (HG576_00200)	-	35818..36872 (+)	1055	Protein_33	P-type conjugative transfer protein TrbL	-
HG576_RS00205 (HG576_00205)	comB7	36888..37001 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG576_RS00210 (HG576_00210)	comB8	36998..37735 (+)	738	WP_029650095.1	virB8 family protein	Machinery gene
HG576_RS00215 (HG576_00215)	comB9	37735..38709 (+)	975	WP_078240866.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG576_RS00220 (HG576_00220)	comB10	38702..39832 (+)	1131	WP_077654994.1	DNA type IV secretion system protein ComB10	Machinery gene
HG576_RS00225 (HG576_00225)	-	39903..41315 (+)	1413	WP_078249663.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG576_RS00230 (HG576_00230)	gmd	41356..42501 (+)	1146	WP_078264563.1	GDP-mannose 4,6-dehydratase	-
HG576_RS00235 (HG576_00235)	-	42494..43426 (+)	933	WP_001002485.1	GDP-L-fucose synthase	-
HG576_RS00240 (HG576_00240)	-	43819..44178 (-)	360	WP_079332538.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 42012.57 Da
• Isoelectric Point: 9.8254

>NTDB_id=439638 HG576_RS00220 WP_077654994.1 38702..39832(+) (comB10) [Helicobacter pylori strain LIM-003]
MNKWIKGAVVFVGGFITITSISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=439638 HG576_RS00220 WP_077654994.1 38702..39832(+) (comB10) [Helicobacter pylori strain LIM-003]
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTATAACGATTACAAGTATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCCACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATTGCCACTAATGAAAACAAGCTTCTACGCACCATTACGGCTGACAAAATGATACCCGCCTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTTATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTGGGATCA
CTTCAGCTTTAAACAACAGAGGCAATAAAGAAGAGGTAACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAAAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.809	100	0.968