Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HG576_RS00210 Genome accession   NZ_CP051539
Coordinates   36998..37735 (+) Length   245 a.a.
NCBI ID   WP_029650095.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 31998..42735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG576_RS00185 (HG576_00185) panD 34148..34501 (+) 354 WP_000142277.1 aspartate 1-decarboxylase -
  HG576_RS00190 (HG576_00190) - 34504..34806 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HG576_RS00195 (HG576_00195) - 34806..35810 (+) 1005 WP_202139214.1 PDZ domain-containing protein -
  HG576_RS00200 (HG576_00200) - 35818..36872 (+) 1055 Protein_33 P-type conjugative transfer protein TrbL -
  HG576_RS00205 (HG576_00205) comB7 36888..37001 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HG576_RS00210 (HG576_00210) comB8 36998..37735 (+) 738 WP_029650095.1 virB8 family protein Machinery gene
  HG576_RS00215 (HG576_00215) comB9 37735..38709 (+) 975 WP_078240866.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG576_RS00220 (HG576_00220) comB10 38702..39832 (+) 1131 WP_077654994.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG576_RS00225 (HG576_00225) - 39903..41315 (+) 1413 WP_078249663.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG576_RS00230 (HG576_00230) gmd 41356..42501 (+) 1146 WP_078264563.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28512.71 Da        Isoelectric Point: 8.9546

>NTDB_id=439636 HG576_RS00210 WP_029650095.1 36998..37735(+) (comB8) [Helicobacter pylori strain LIM-003]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=439636 HG576_RS00210 WP_029650095.1 36998..37735(+) (comB8) [Helicobacter pylori strain LIM-003]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.98