Detailed information NTG0439619

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG578_RS00215
• Genome accession: NZ_CP051537
• Coordinates: 39165..40295 (+)
• Length: 376 a.a.
• NCBI ID: WP_202134816.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-005
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34165..45295

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG578_RS00180 (HG578_00180)	panD	34595..34948 (+)	354	WP_077642785.1	aspartate 1-decarboxylase	-
HG578_RS00185 (HG578_00185)	-	34951..35253 (+)	303	WP_000347931.1	YbaB/EbfC family nucleoid-associated protein	-
HG578_RS00190 (HG578_00190)	-	35253..36257 (+)	1005	WP_202134815.1	PDZ domain-containing protein	-
HG578_RS00195 (HG578_00195)	comB6	36265..37320 (+)	1056	WP_202135161.1	P-type conjugative transfer protein TrbL	Machinery gene
HG578_RS00200 (HG578_00200)	comB7	37336..37449 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG578_RS00205 (HG578_00205)	comB8	37446..38189 (+)	744	WP_165536104.1	virB8 family protein	Machinery gene
HG578_RS00210 (HG578_00210)	comB9	38189..39172 (+)	984	WP_164531543.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG578_RS00215 (HG578_00215)	comB10	39165..40295 (+)	1131	WP_202134816.1	DNA type IV secretion system protein ComB10	Machinery gene
HG578_RS00220 (HG578_00220)	-	40366..41778 (+)	1413	WP_202134817.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG578_RS00225 (HG578_00225)	gmd	41806..42951 (+)	1146	WP_187924260.1	GDP-mannose 4,6-dehydratase	-
HG578_RS00230 (HG578_00230)	-	42944..43876 (+)	933	WP_202134818.1	GDP-L-fucose synthase	-
HG578_RS00235 (HG578_00235)	-	44270..44572 (-)	303	WP_202134819.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41800.25 Da
• Isoelectric Point: 9.8624

>NTDB_id=439619 HG578_RS00215 WP_202134816.1 39165..40295(+) (comB10) [Helicobacter pylori strain LIM-005]
MNKWLKGALIVAGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEEIFTNPPIDPKTTPPKKDFSSKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=439619 HG578_RS00215 WP_202134816.1 39165..40295(+) (comB10) [Helicobacter pylori strain LIM-005]
ATGAATAAGTGGCTTAAGGGGGCGTTGATTGTTGCAGGGGGTTTTGCCACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCTAAAGAAGAAATTTTTACTAACCCTCCCATAGATCCAAAAAC
AACCCCCCCTAAAAAAGACTTTTCTTCAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTCTCATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTGGGATCA
CTTCAGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTTTTCATTTCGCCTAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.809	100	0.968