Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HG578_RS00205 Genome accession   NZ_CP051537
Coordinates   37446..38189 (+) Length   247 a.a.
NCBI ID   WP_165536104.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-005     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32446..43189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG578_RS00180 (HG578_00180) panD 34595..34948 (+) 354 WP_077642785.1 aspartate 1-decarboxylase -
  HG578_RS00185 (HG578_00185) - 34951..35253 (+) 303 WP_000347931.1 YbaB/EbfC family nucleoid-associated protein -
  HG578_RS00190 (HG578_00190) - 35253..36257 (+) 1005 WP_202134815.1 PDZ domain-containing protein -
  HG578_RS00195 (HG578_00195) comB6 36265..37320 (+) 1056 WP_202135161.1 P-type conjugative transfer protein TrbL Machinery gene
  HG578_RS00200 (HG578_00200) comB7 37336..37449 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HG578_RS00205 (HG578_00205) comB8 37446..38189 (+) 744 WP_165536104.1 virB8 family protein Machinery gene
  HG578_RS00210 (HG578_00210) comB9 38189..39172 (+) 984 WP_164531543.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG578_RS00215 (HG578_00215) comB10 39165..40295 (+) 1131 WP_202134816.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG578_RS00220 (HG578_00220) - 40366..41778 (+) 1413 WP_202134817.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG578_RS00225 (HG578_00225) gmd 41806..42951 (+) 1146 WP_187924260.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28724.96 Da        Isoelectric Point: 8.9546

>NTDB_id=439617 HG578_RS00205 WP_165536104.1 37446..38189(+) (comB8) [Helicobacter pylori strain LIM-005]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=439617 HG578_RS00205 WP_165536104.1 37446..38189(+) (comB8) [Helicobacter pylori strain LIM-005]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATTTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGCATTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAATCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGCTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGTT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTGACGAACGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCACCGACTAACAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

98.381

100

0.984