Detailed information NTG0439615

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG578_RS00195
• Genome accession: NZ_CP051537
• Coordinates: 36265..37320 (+)
• Length: 351 a.a.
• NCBI ID: WP_202135161.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-005
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31265..42320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG578_RS00165 (HG578_00165)	-	31674..32087 (+)	414	WP_001023005.1	universal stress protein	-
HG578_RS00170 (HG578_00170)	-	32102..32377 (+)	276	WP_000781794.1	ATP-dependent Clp protease adaptor ClpS	-
HG578_RS00175 (HG578_00175)	-	32377..34605 (+)	2229	WP_187924265.1	ATP-dependent Clp protease ATP-binding subunit	-
HG578_RS00180 (HG578_00180)	panD	34595..34948 (+)	354	WP_077642785.1	aspartate 1-decarboxylase	-
HG578_RS00185 (HG578_00185)	-	34951..35253 (+)	303	WP_000347931.1	YbaB/EbfC family nucleoid-associated protein	-
HG578_RS00190 (HG578_00190)	-	35253..36257 (+)	1005	WP_202134815.1	PDZ domain-containing protein	-
HG578_RS00195 (HG578_00195)	comB6	36265..37320 (+)	1056	WP_202135161.1	P-type conjugative transfer protein TrbL	Machinery gene
HG578_RS00200 (HG578_00200)	comB7	37336..37449 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG578_RS00205 (HG578_00205)	comB8	37446..38189 (+)	744	WP_165536104.1	virB8 family protein	Machinery gene
HG578_RS00210 (HG578_00210)	comB9	38189..39172 (+)	984	WP_164531543.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG578_RS00215 (HG578_00215)	comB10	39165..40295 (+)	1131	WP_202134816.1	DNA type IV secretion system protein ComB10	Machinery gene
HG578_RS00220 (HG578_00220)	-	40366..41778 (+)	1413	WP_202134817.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39633.55 Da
• Isoelectric Point: 9.0413

>NTDB_id=439615 HG578_RS00195 WP_202135161.1 36265..37320(+) (comB6) [Helicobacter pylori strain LIM-005]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNMSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439615 HG578_RS00195 WP_202135161.1 36265..37320(+) (comB6) [Helicobacter pylori strain LIM-005]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTTACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAATTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGTT
TCATTAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGTGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACATGTCGGTTACTAAGGCTTTGATAGATGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.157	100	0.952