Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HG580_RS01635 Genome accession   NZ_CP051536
Coordinates   334209..335009 (+) Length   266 a.a.
NCBI ID   WP_180455731.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-007     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 329209..340009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG580_RS01600 pseH 329706..330248 (+) 543 WP_202146080.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  HG580_RS01605 - 330181..331119 (-) 939 WP_202146081.1 tetraacyldisaccharide 4'-kinase -
  HG580_RS01610 - 331116..331898 (-) 783 WP_202146082.1 NAD+ synthase -
  HG580_RS01620 ilvC 332145..333137 (+) 993 WP_202146083.1 ketol-acid reductoisomerase -
  HG580_RS01625 minD 333161..333967 (+) 807 WP_202133079.1 septum site-determining protein MinD -
  HG580_RS01630 minE 333964..334197 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HG580_RS01635 dprA 334209..335009 (+) 801 WP_180455731.1 DNA-processing protein DprA Machinery gene
  HG580_RS01640 dprB 335006..335410 (+) 405 WP_202146084.1 Holliday junction resolvase RuvX Machinery gene
  HG580_RS01645 - 335536..335892 (+) 357 WP_202146085.1 tetratricopeptide repeat protein -
  HG580_RS01650 - 336087..336416 (+) 330 WP_202146086.1 hypothetical protein -
  HG580_RS01655 - 336409..336975 (+) 567 WP_202146087.1 hypothetical protein -
  HG580_RS01660 - 336987..337535 (+) 549 WP_202146088.1 glycoside hydrolase family protein -
  HG580_RS01665 - 337997..338383 (+) 387 WP_202146089.1 DUF1294 domain-containing protein -
  HG580_RS01670 - 338383..339168 (+) 786 WP_202146090.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29808.74 Da        Isoelectric Point: 8.5799

>NTDB_id=439602 HG580_RS01635 WP_180455731.1 334209..335009(+) (dprA) [Helicobacter pylori strain LIM-007]
MKSNFQYSALENIPKAFDILKDPPKKLYCVGDIKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEIKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=439602 HG580_RS01635 WP_180455731.1 334209..335009(+) (dprA) [Helicobacter pylori strain LIM-007]
ATGAAAAGCAACTTCCAATACAGCGCGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATATAAAGCTTTTAGACGCACCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCCACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTTATGCCTGTTAAAG
GCTCTTTTTTAGCCAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTAATTATCCCCCAAGCGGATTTGAAAAGCGGC
TCTATGAGCAGCGCTAGATTAGCCCAAAAGTATCAAAAACCCTTATTTGTTTTGCCTCAGCGCCTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ATCATTTAAAAGAAATGCCTGAAATCAAAGACGAATTTTTAGAATATTGCGCCAAAAACCCAAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAGCGCATCAATCATATCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.992

100

0.97
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414