Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG580_RS01640 Genome accession   NZ_CP051536
Coordinates   335006..335410 (+) Length   134 a.a.
NCBI ID   WP_202146084.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 330006..340410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG580_RS01605 - 330181..331119 (-) 939 WP_202146081.1 tetraacyldisaccharide 4'-kinase -
  HG580_RS01610 - 331116..331898 (-) 783 WP_202146082.1 NAD+ synthase -
  HG580_RS01620 ilvC 332145..333137 (+) 993 WP_202146083.1 ketol-acid reductoisomerase -
  HG580_RS01625 minD 333161..333967 (+) 807 WP_202133079.1 septum site-determining protein MinD -
  HG580_RS01630 minE 333964..334197 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HG580_RS01635 dprA 334209..335009 (+) 801 WP_180455731.1 DNA-processing protein DprA Machinery gene
  HG580_RS01640 dprB 335006..335410 (+) 405 WP_202146084.1 Holliday junction resolvase RuvX Machinery gene
  HG580_RS01645 - 335536..335892 (+) 357 WP_202146085.1 tetratricopeptide repeat protein -
  HG580_RS01650 - 336087..336416 (+) 330 WP_202146086.1 hypothetical protein -
  HG580_RS01655 - 336409..336975 (+) 567 WP_202146087.1 hypothetical protein -
  HG580_RS01660 - 336987..337535 (+) 549 WP_202146088.1 glycoside hydrolase family protein -
  HG580_RS01665 - 337997..338383 (+) 387 WP_202146089.1 DUF1294 domain-containing protein -
  HG580_RS01670 - 338383..339168 (+) 786 WP_202146090.1 hypothetical protein -
  HG580_RS01675 - 339158..340258 (+) 1101 WP_202146091.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15122.60 Da        Isoelectric Point: 9.1727

>NTDB_id=439603 HG580_RS01640 WP_202146084.1 335006..335410(+) (dprB) [Helicobacter pylori strain LIM-007]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACGILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439603 HG580_RS01640 WP_202146084.1 335006..335410(+) (dprB) [Helicobacter pylori strain LIM-007]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGACT
CGCTATTAAAGACGGCCGACTAGACTCTTTGAGCGCTTGTGGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948