Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HG581_RS01615 Genome accession   NZ_CP051535
Coordinates   336244..337044 (+) Length   266 a.a.
NCBI ID   WP_202138220.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-008     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 331244..342044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG581_RS01580 (HG581_01580) pseH 331745..332287 (+) 543 WP_202138217.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  HG581_RS01585 (HG581_01585) - 332220..333158 (-) 939 WP_202138218.1 tetraacyldisaccharide 4'-kinase -
  HG581_RS01590 (HG581_01590) - 333145..333936 (-) 792 WP_202138219.1 NAD+ synthase -
  HG581_RS01600 (HG581_01600) ilvC 334185..335177 (+) 993 WP_120882709.1 ketol-acid reductoisomerase -
  HG581_RS01605 (HG581_01605) minD 335201..336007 (+) 807 WP_078251377.1 septum site-determining protein MinD -
  HG581_RS01610 (HG581_01610) minE 336004..336237 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HG581_RS01615 (HG581_01615) dprA 336244..337044 (+) 801 WP_202138220.1 DNA-processing protein DprA Machinery gene
  HG581_RS01620 (HG581_01620) dprB 337041..337445 (+) 405 WP_120989896.1 Holliday junction resolvase RuvX Machinery gene
  HG581_RS01625 (HG581_01625) - 337675..338490 (+) 816 WP_338154413.1 tetratricopeptide repeat protein -
  HG581_RS01630 (HG581_01630) - 338618..338956 (+) 339 WP_000699893.1 hypothetical protein -
  HG581_RS01635 (HG581_01635) - 338940..339500 (+) 561 WP_202138222.1 hypothetical protein -
  HG581_RS01640 (HG581_01640) - 339671..340552 (-) 882 WP_202138223.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29765.69 Da        Isoelectric Point: 8.5952

>NTDB_id=439579 HG581_RS01615 WP_202138220.1 336244..337044(+) (dprA) [Helicobacter pylori strain LIM-008]
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDLIYPANNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMSEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=439579 HG581_RS01615 WP_202138220.1 336244..337044(+) (dprA) [Helicobacter pylori strain LIM-008]
ATGAAAAGCCATTTCCAATACAGCGCGCTAGAAAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTGGAAGCGCCTTTAAAAGTGGCGATCATCGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTGGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTGATCTATCCTGCGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCATTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCAAGATTAGCCCAAAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCTTGAACGAGAGCGACGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGTCTGAAATGAAAGATGAATTTTTAGAATATTGTGCGAAAAACCCGAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTTTTGGGTAAAATCAAGCGCATCAATCATCTCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.241

100

0.962
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414