Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG581_RS01620 Genome accession   NZ_CP051535
Coordinates   337041..337445 (+) Length   134 a.a.
NCBI ID   WP_120989896.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 332041..342445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG581_RS01585 (HG581_01585) - 332220..333158 (-) 939 WP_202138218.1 tetraacyldisaccharide 4'-kinase -
  HG581_RS01590 (HG581_01590) - 333145..333936 (-) 792 WP_202138219.1 NAD+ synthase -
  HG581_RS01600 (HG581_01600) ilvC 334185..335177 (+) 993 WP_120882709.1 ketol-acid reductoisomerase -
  HG581_RS01605 (HG581_01605) minD 335201..336007 (+) 807 WP_078251377.1 septum site-determining protein MinD -
  HG581_RS01610 (HG581_01610) minE 336004..336237 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HG581_RS01615 (HG581_01615) dprA 336244..337044 (+) 801 WP_202138220.1 DNA-processing protein DprA Machinery gene
  HG581_RS01620 (HG581_01620) dprB 337041..337445 (+) 405 WP_120989896.1 Holliday junction resolvase RuvX Machinery gene
  HG581_RS01625 (HG581_01625) - 337675..338490 (+) 816 WP_338154413.1 tetratricopeptide repeat protein -
  HG581_RS01630 (HG581_01630) - 338618..338956 (+) 339 WP_000699893.1 hypothetical protein -
  HG581_RS01635 (HG581_01635) - 338940..339500 (+) 561 WP_202138222.1 hypothetical protein -
  HG581_RS01640 (HG581_01640) - 339671..340552 (-) 882 WP_202138223.1 RluA family pseudouridine synthase -
  HG581_RS01645 (HG581_01645) recJ 340552..342102 (-) 1551 WP_202138224.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15213.63 Da        Isoelectric Point: 8.2895

>NTDB_id=439580 HG581_RS01620 WP_120989896.1 337041..337445(+) (dprB) [Helicobacter pylori strain LIM-008]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439580 HG581_RS01620 WP_120989896.1 337041..337445(+) (dprB) [Helicobacter pylori strain LIM-008]
GTGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGAATCGCTGCACTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.015

100

0.97