Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HG583_RS01780 Genome accession   NZ_CP051533
Coordinates   364908..365708 (+) Length   266 a.a.
NCBI ID   WP_202143168.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-010     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 359908..370708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG583_RS01745 (HG583_01735) pseH 360408..360950 (+) 543 WP_000742749.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  HG583_RS01750 (HG583_01740) - 360883..361821 (-) 939 WP_202143167.1 tetraacyldisaccharide 4'-kinase -
  HG583_RS01755 (HG583_01745) - 361818..362600 (-) 783 WP_128036728.1 NAD+ synthase -
  HG583_RS01765 (HG583_01755) ilvC 362849..363841 (+) 993 WP_163497883.1 ketol-acid reductoisomerase -
  HG583_RS01770 (HG583_01760) minD 363865..364671 (+) 807 WP_001019108.1 septum site-determining protein MinD -
  HG583_RS01775 (HG583_01765) minE 364668..364901 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HG583_RS01780 (HG583_01770) dprA 364908..365708 (+) 801 WP_202143168.1 DNA-processing protein DprA Machinery gene
  HG583_RS01785 (HG583_01775) dprB 365705..366109 (+) 405 WP_202143169.1 Holliday junction resolvase RuvX Machinery gene
  HG583_RS01790 (HG583_01780) - 366386..367246 (+) 861 WP_202143433.1 tetratricopeptide repeat protein -
  HG583_RS01795 (HG583_01785) - 367374..367712 (+) 339 WP_202143170.1 hypothetical protein -
  HG583_RS01800 (HG583_01790) - 367696..368256 (+) 561 WP_202143171.1 hypothetical protein -
  HG583_RS01805 (HG583_01795) - 368430..369311 (-) 882 WP_202143172.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29868.87 Da        Isoelectric Point: 8.5799

>NTDB_id=439536 HG583_RS01780 WP_202143168.1 364908..365708(+) (dprA) [Helicobacter pylori strain LIM-010]
MKSNFQYSVLENIPKAFDMLKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIVQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=439536 HG583_RS01780 WP_202143168.1 364908..365708(+) (dprA) [Helicobacter pylori strain LIM-010]
ATGAAAAGTAATTTCCAATACAGCGTGCTAGAGAATATCCCTAAAGCCTTTGACATGCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCGATCATAGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTGATTTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGTGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTTATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTCATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCTTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGTGCGAAAAACCCTAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTAGGTAAGATCAAGCGCATCAATCACATTGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.241

100

0.962
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414