Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG583_RS01785 Genome accession   NZ_CP051533
Coordinates   365705..366109 (+) Length   134 a.a.
NCBI ID   WP_202143169.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 360705..371109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG583_RS01750 (HG583_01740) - 360883..361821 (-) 939 WP_202143167.1 tetraacyldisaccharide 4'-kinase -
  HG583_RS01755 (HG583_01745) - 361818..362600 (-) 783 WP_128036728.1 NAD+ synthase -
  HG583_RS01765 (HG583_01755) ilvC 362849..363841 (+) 993 WP_163497883.1 ketol-acid reductoisomerase -
  HG583_RS01770 (HG583_01760) minD 363865..364671 (+) 807 WP_001019108.1 septum site-determining protein MinD -
  HG583_RS01775 (HG583_01765) minE 364668..364901 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HG583_RS01780 (HG583_01770) dprA 364908..365708 (+) 801 WP_202143168.1 DNA-processing protein DprA Machinery gene
  HG583_RS01785 (HG583_01775) dprB 365705..366109 (+) 405 WP_202143169.1 Holliday junction resolvase RuvX Machinery gene
  HG583_RS01790 (HG583_01780) - 366386..367246 (+) 861 WP_202143433.1 tetratricopeptide repeat protein -
  HG583_RS01795 (HG583_01785) - 367374..367712 (+) 339 WP_202143170.1 hypothetical protein -
  HG583_RS01800 (HG583_01790) - 367696..368256 (+) 561 WP_202143171.1 hypothetical protein -
  HG583_RS01805 (HG583_01795) - 368430..369311 (-) 882 WP_202143172.1 RluA family pseudouridine synthase -
  HG583_RS01810 (HG583_01800) recJ 369311..370861 (-) 1551 WP_202143173.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15322.81 Da        Isoelectric Point: 8.7220

>NTDB_id=439537 HG583_RS01785 WP_202143169.1 365705..366109(+) (dprB) [Helicobacter pylori strain LIM-010]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPSENYADTNIRIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLATKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439537 HG583_RS01785 WP_202143169.1 365705..366109(+) (dprB) [Helicobacter pylori strain LIM-010]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TTGGCAAGCCTAGTGAAAATTATGCGGATACGAATATCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955