Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   HG420_RS12165 Genome accession   NZ_CP051518
Coordinates   389471..389659 (-) Length   62 a.a.
NCBI ID   WP_014573336.1    Uniprot ID   -
Organism   Lactococcus cremoris strain F     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384471..394659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG420_RS02055 (HG420_02060) - 385397..386206 (-) 810 WP_011677177.1 metal ABC transporter permease -
  HG420_RS02060 (HG420_02065) - 386199..386936 (-) 738 WP_015082929.1 metal ABC transporter ATP-binding protein -
  HG420_RS02065 (HG420_02070) - 387115..387957 (-) 843 WP_011677179.1 zinc ABC transporter substrate-binding protein -
  HG420_RS02070 (HG420_02075) - 387954..388391 (-) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  HG420_RS02075 (HG420_02080) comGG 388471..388770 (-) 300 WP_011677181.1 competence type IV pilus minor pilin ComGG Machinery gene
  HG420_RS02080 (HG420_02085) comGF 388794..389240 (-) 447 WP_015082930.1 competence type IV pilus minor pilin ComGF Machinery gene
  HG420_RS02085 (HG420_02090) comGE 389203..389439 (-) 237 WP_014573335.1 competence type IV pilus minor pilin ComGE Machinery gene
  HG420_RS12165 comGD 389471..389659 (-) 189 WP_014573336.1 hypothetical protein Machinery gene
  HG420_RS02095 (HG420_02100) comGC 389861..390238 (-) 378 WP_015082932.1 competence type IV pilus major pilin ComGC Machinery gene
  HG420_RS02100 (HG420_02105) comGB 390256..391281 (-) 1026 WP_051013189.1 competence type IV pilus assembly protein ComGB Machinery gene
  HG420_RS02105 (HG420_02110) comGA 391181..392161 (-) 981 WP_015082934.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7336.65 Da        Isoelectric Point: 8.3463

>NTDB_id=439488 HG420_RS12165 WP_014573336.1 389471..389659(-) (comGD) [Lactococcus cremoris strain F]
MIYENKEIDIPKEVEMAEFLIIFDEKGGNSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN

Nucleotide


Download         Length: 189 bp        

>NTDB_id=439488 HG420_RS12165 WP_014573336.1 389471..389659(-) (comGD) [Lactococcus cremoris strain F]
TTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTATATTTGATGAGAAAGG
GGGGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATCAAATGGAGATGGGGA
GTGGAAAATATAAAAAGAAAATCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

93.548

100

0.935
  comYD Streptococcus mutans UA140

43.396

85.484

0.371
  comYD Streptococcus mutans UA159

43.396

85.484

0.371