Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   HG420_RS02080 Genome accession   NZ_CP051518
Coordinates   388794..389240 (-) Length   148 a.a.
NCBI ID   WP_015082930.1    Uniprot ID   A0AAJ6N3H2
Organism   Lactococcus cremoris strain F     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383794..394240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG420_RS02055 (HG420_02060) - 385397..386206 (-) 810 WP_011677177.1 metal ABC transporter permease -
  HG420_RS02060 (HG420_02065) - 386199..386936 (-) 738 WP_015082929.1 metal ABC transporter ATP-binding protein -
  HG420_RS02065 (HG420_02070) - 387115..387957 (-) 843 WP_011677179.1 zinc ABC transporter substrate-binding protein -
  HG420_RS02070 (HG420_02075) - 387954..388391 (-) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  HG420_RS02075 (HG420_02080) comGG 388471..388770 (-) 300 WP_011677181.1 competence type IV pilus minor pilin ComGG Machinery gene
  HG420_RS02080 (HG420_02085) comGF 388794..389240 (-) 447 WP_015082930.1 competence type IV pilus minor pilin ComGF Machinery gene
  HG420_RS02085 (HG420_02090) comGE 389203..389439 (-) 237 WP_014573335.1 competence type IV pilus minor pilin ComGE Machinery gene
  HG420_RS12165 comGD 389471..389659 (-) 189 WP_014573336.1 hypothetical protein Machinery gene
  HG420_RS02095 (HG420_02100) comGC 389861..390238 (-) 378 WP_015082932.1 competence type IV pilus major pilin ComGC Machinery gene
  HG420_RS02100 (HG420_02105) comGB 390256..391281 (-) 1026 WP_051013189.1 competence type IV pilus assembly protein ComGB Machinery gene
  HG420_RS02105 (HG420_02110) comGA 391181..392161 (-) 981 WP_015082934.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17160.85 Da        Isoelectric Point: 7.6669

>NTDB_id=439451 HG420_RS02080 WP_015082930.1 388794..389240(-) (comGF) [Lactococcus cremoris strain F]
MERKFCDLKLKIRAFTLLECLVALLAISGSVLVISGLTRMIEEQMKISQNDSRKDWQIFCEQMRSELSGEKLDNVNQNFL
YVTKDKKLRFGLVGDDFRKSDDKGQGYQPMLYDLKGAKIQAEENLIKITIDFDNGGERVFIYRFTDTK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=439451 HG420_RS02080 WP_015082930.1 388794..389240(-) (comGF) [Lactococcus cremoris strain F]
ATGGAAAGGAAATTTTGCGACTTGAAGCTCAAAATTAGGGCATTTACTTTACTTGAATGTCTCGTAGCACTTTTGGCAAT
TTCTGGTTCAGTGCTAGTCATCTCAGGGCTGACTAGAATGATTGAAGAACAGATGAAAATAAGCCAGAATGATAGTAGGA
AAGATTGGCAAATATTTTGTGAACAAATGCGTTCAGAACTCTCCGGAGAAAAATTAGACAATGTGAATCAAAATTTTTTG
TATGTGACCAAAGATAAGAAGTTACGGTTCGGATTAGTAGGGGATGATTTTCGTAAAAGTGATGATAAAGGGCAAGGATA
CCAACCGATGCTTTATGATTTAAAAGGAGCAAAAATTCAGGCAGAAGAAAATTTGATAAAAATAACAATTGATTTTGATA
ATGGAGGTGAGCGAGTATTTATTTATCGATTTACTGATACAAAGTAA

Domains

Predicted by InterProScan.

Putative Competence protein ComGF (ComGF)

(45-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Lactococcus lactis subsp. cremoris KW2

98.582

95.27

0.939
  comYF Streptococcus mutans UA140

44.681

95.27

0.426
  comYF Streptococcus mutans UA159

43.972

95.27

0.419
  comGF/cglF Streptococcus mitis SK321

39.286

94.595

0.372
  comGF/cglF Streptococcus mitis NCTC 12261

39.286

94.595

0.372