Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   HG420_RS02075 Genome accession   NZ_CP051518
Coordinates   388471..388770 (-) Length   99 a.a.
NCBI ID   WP_011677181.1    Uniprot ID   A0AA47KWG7
Organism   Lactococcus cremoris strain F     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 383937..388391 388471..388770 flank 80


Gene organization within MGE regions


Location: 383937..388770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG420_RS02055 (HG420_02060) - 385397..386206 (-) 810 WP_011677177.1 metal ABC transporter permease -
  HG420_RS02060 (HG420_02065) - 386199..386936 (-) 738 WP_015082929.1 metal ABC transporter ATP-binding protein -
  HG420_RS02065 (HG420_02070) - 387115..387957 (-) 843 WP_011677179.1 zinc ABC transporter substrate-binding protein -
  HG420_RS02070 (HG420_02075) - 387954..388391 (-) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  HG420_RS02075 (HG420_02080) comGG 388471..388770 (-) 300 WP_011677181.1 competence type IV pilus minor pilin ComGG Machinery gene

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11240.23 Da        Isoelectric Point: 9.5415

>NTDB_id=439450 HG420_RS02075 WP_011677181.1 388471..388770(-) (comGG) [Lactococcus cremoris strain F]
MVLLLIFSLFLQFYLQKQVLTAQQLKIEKERLTAELMVSLALKKDLKTSGQLNFDCGNLTYKLLTDLSADSTSGGQTVSN
KTYCFDVRLKDGRIFQIVK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=439450 HG420_RS02075 WP_011677181.1 388471..388770(-) (comGG) [Lactococcus cremoris strain F]
TTGGTTTTACTGCTAATTTTTTCTTTATTTCTACAGTTTTATTTGCAAAAACAGGTGCTTACAGCTCAGCAATTGAAAAT
AGAAAAGGAGCGACTGACAGCCGAATTAATGGTTTCATTGGCTCTTAAAAAGGATTTGAAAACGAGTGGTCAACTTAATT
TTGATTGTGGAAATTTAACTTACAAATTACTGACAGATCTGTCAGCTGATTCAACTAGCGGTGGTCAAACTGTTAGTAAT
AAAACTTATTGTTTTGATGTTCGGCTTAAGGATGGAAGAATTTTTCAAATAGTAAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Lactococcus lactis subsp. cremoris KW2

98.99

100

0.99