Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HGK51_RS00200 Genome accession   NZ_CP051511
Coordinates   33659..34402 (+) Length   247 a.a.
NCBI ID   WP_000660504.1    Uniprot ID   A0AB32X630
Organism   Helicobacter pylori strain ASHA-006     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 28659..39402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK51_RS00175 (HGK51_00175) panD 30812..31162 (+) 351 WP_000142282.1 aspartate 1-decarboxylase -
  HGK51_RS00180 (HGK51_00180) - 31173..31475 (+) 303 WP_000347918.1 YbaB/EbfC family nucleoid-associated protein -
  HGK51_RS00185 (HGK51_00185) - 31475..32470 (+) 996 WP_202171147.1 PDZ domain-containing protein -
  HGK51_RS00190 (HGK51_00190) comB6 32478..33533 (+) 1056 WP_202171146.1 P-type conjugative transfer protein TrbL Machinery gene
  HGK51_RS00195 (HGK51_00195) comB7 33549..33662 (+) 114 WP_001218100.1 hypothetical protein Machinery gene
  HGK51_RS00200 (HGK51_00200) comB8 33659..34402 (+) 744 WP_000660504.1 virB8 family protein Machinery gene
  HGK51_RS00205 (HGK51_00205) comB9 34402..35367 (+) 966 WP_202170806.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HGK51_RS00210 (HGK51_00210) comB10 35360..36496 (+) 1137 WP_202166724.1 DNA type IV secretion system protein ComB10 Machinery gene
  HGK51_RS00215 (HGK51_00215) - 36567..37979 (+) 1413 WP_202170807.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HGK51_RS00220 (HGK51_00220) gmd 37994..39139 (+) 1146 WP_000659855.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28585.78 Da        Isoelectric Point: 8.9830

>NTDB_id=439410 HGK51_RS00200 WP_000660504.1 33659..34402(+) (comB8) [Helicobacter pylori strain ASHA-006]
MKEKPFNSEQLAFLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=439410 HGK51_RS00200 WP_000660504.1 33659..34402(+) (comB8) [Helicobacter pylori strain ASHA-006]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGGCTTTTTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTCAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTGATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATCTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAACTGGTGTATGAAAAGCGTTATAAAATCGCGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCCAAAAACCCTACCGGTTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968